Evidence map›Paper›PMID 35166825›Full record

ArticleGenetics2022

Zebrafish information network, the knowledgebase for Danio rerio research.

Yvonne M Bradford, Ceri E Van Slyke, Leyla Ruzicka, Amy Singer, Anne Eagle, David Fashena, Douglas G Howe, Ken Frazer, Ryan Martin, Holly Paddock and 3 more

Abstract read
In one paragraph

Article in Genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 140 papers.

0numbers the graph read from it
0cells of the map it votes in
140citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

140 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
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  9. Article
  10. Article
  11. Review
  12. Article
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  15. Article
  16. Review
  17. Article
  18. Article
  19. Specialized gas-exchange endothelium of the zebrafish gill.bioRxiv : the preprint server for biology · 2025
    Article
  20. Article

80 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Yvonne M BradfordThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.ORCID 0000-0002-9900-7880
Ceri E Van SlykeThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.ORCID 0000-0002-2244-7917
Leyla RuzickaThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.ORCID 0000-0002-1009-339X
Amy SingerThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.ORCID 0000-0002-9663-3237
Anne EagleThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.ORCID 0000-0002-6271-5250
David FashenaThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.ORCID 0000-0001-9656-0683
Douglas G HoweThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.ORCID 0000-0001-5831-7439
Ken FrazerThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.
Ryan MartinThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.
Holly PaddockThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.
Christian PichThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.ORCID 0000-0001-5334-4542
Sridhar RamachandranThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.ORCID 0000-0002-2246-3722
Monte WesterfieldThe Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.ORCID 0000-0003-1187-7839

Funding

ZFIN: The Zebrafish Model Organism DatabaseU41HG002659 · NHGRI · UNIVERSITY OF OREGON · PI HOWE, DOUGLAS GORDON · 2011 to 2020
$30.7M
ZFIN: The Zebrafish Model Organism DatabaseU24HG002659 · NHGRI · UNIVERSITY OF OREGON · PI WESTERFIELD, MONTE · 2021 to 2025
$10.8M
NHGRI NIH HHS U24 HG002659NIH HHS U41 HG002659
6 · The paper itself

Abstract

The Zebrafish Information Network (zfin.org) is the central repository for Danio rerio genetic and genomic data. The Zebrafish Information Network has served the zebrafish research community since 1994, expertly curating, integrating, and displaying zebrafish data. Key data types available at the Zebrafish Information Network include, but are not limited to, genes, alleles, human disease models, gene expression, phenotype, and gene function. The Zebrafish Information Network makes zebrafish research data Findable, Accessible, Interoperable, and Reusable through nomenclature, curatorial and annotation activities, web interfaces, and data downloads. Recently, the Zebrafish Information Network and 6 other model organism knowledgebases have collaborated to form the Alliance of Genome Resources, aiming to develop sustainable genome information resources that enable the use of model organisms to understand the genetic and genomic basis of human biology and disease. Here, we provide an overview of the data available at the Zebrafish Information Network including recent updates to the gene page to provide access to single-cell RNA sequencing data, links to Alliance web pages, ribbon diagrams to summarize the biological systems and Gene Ontology terms that have annotations, and data integration with the Alliance of Genome Resources.

Indexed as

Databases, GeneticZebrafishAnimalsGene OntologyGenomeGenomicsDanio reriodatabaseknowledgebasezebrafish

Identifiers

PMID35166825
PMCPMC8982015

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.