Evidence map›Paper›PMID 35166339›Full record

ArticleGigaScience2022

Genome of the ramshorn snail Biomphalaria straminea-an obligate intermediate host of schistosomiasis.

Wenyan Nong, Yifei Yu, Madeleine E Aase-Remedios, Yichun Xie, Wai Lok So, Yiqian Li, Cheuk Fung Wong, Toby Baril, Sean T S Law, Sheung Yee Lai and 9 more

Open access · greenAbstract read
In one paragraph

Article in GigaScience, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Accelerating snail vector genomics.Infectious diseases of poverty · 2024
    Article
  9. Review
  10. Article
  11. Article
  12. The genome and transcriptome of the snailbioRxiv : the preprint server for biology · 2023
    Article
  13. The genome of the deep-sea anemoneProceedings. Biological sciences · 2023
    Article
  14. Article
  15. Review
  16. Article
  17. Rethinking Sesquiterpenoids: A Widespread Hormone in Animals.International journal of molecular sciences · 2022
    Article
  18. Article
  19. PeerJ · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 2 countries.

Wenyan NongSchool of Life Science, Simon F.S. Li Marine Science Laboratory, State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China.ORCID 0000-0002-3277-716X
Yifei YuSchool of Life Science, Simon F.S. Li Marine Science Laboratory, State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China.
Madeleine E Aase-RemediosThe Scottish Oceans Institute, Gatty Marine Laboratory, School of Biology, University of St. Andrews, St. Andrews, UK.ORCID 0000-0001-6829-0815
Yichun XieSchool of Life Science, Simon F.S. Li Marine Science Laboratory, State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China.ORCID 0000-0002-1744-5749
Wai Lok SoSchool of Life Science, Simon F.S. Li Marine Science Laboratory, State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China.ORCID 0000-0001-5048-5454
Yiqian LiSchool of Life Science, Simon F.S. Li Marine Science Laboratory, State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China.
Cheuk Fung WongSchool of Life Science, Simon F.S. Li Marine Science Laboratory, State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China.
Toby BarilUniversity of Exeter, Exeter, UK.
Sean T S LawSchool of Life Science, Simon F.S. Li Marine Science Laboratory, State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China.
Sheung Yee LaiSchool of Life Science, Simon F.S. Li Marine Science Laboratory, State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China.
Jasmine HaimovitzDovetail Genomics, California, USA.
Thomas SwaleDovetail Genomics, California, USA.
Shan-Shan ChenInstitute of Agro-food Standard and Testing Technology, Shanghai Academy of Agricultural Sciences, Shanghai, China.ORCID 0000-0002-1404-7147
Zhen-Peng KaiSchool of Chemical and Environmental Engineering, Shanghai Institute of Technology, Shanghai, China.ORCID 0000-0003-4861-942X
Xi SunSun Yat-sen University, Guangdong, China.ORCID 0000-0003-2213-2763
Zhongdao WuSun Yat-sen University, Guangdong, China.ORCID 0000-0001-5879-9757
Alexander HaywardUniversity of Exeter, Exeter, UK.ORCID 0000-0001-7413-718X
David E K FerrierThe Scottish Oceans Institute, Gatty Marine Laboratory, School of Biology, University of St. Andrews, St. Andrews, UK.ORCID 0000-0003-3247-6233
Jerome H L HuiSchool of Life Science, Simon F.S. Li Marine Science Laboratory, State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China.ORCID 0000-0003-1355-8495
Sun Yat-sen University · CNUniversity of Exeter · GBUniversity of St Andrews · GBShanghai Academy of Agricultural Sciences · CNShanghai Institute of Technology · CN

Funding

Biotechnology and Biological Sciences Research Council BB/M009122/1
6 · The paper itself

Abstract

backgroundSchistosomiasis, or bilharzia, is a parasitic disease caused by trematode flatworms of the genus Schistosoma. Infection by Schistosoma mansoni in humans results when cercariae emerge into water from freshwater snails in the genus Biomphalaria and seek out and penetrate human skin. The snail Biomphalaria straminea is native to South America and is now also present in Central America and China, and represents a potential vector host for spreading schistosomiasis. To date, genomic information for the genus is restricted to the neotropical species Biomphalaria glabrata. This limits understanding of the biology and management of other schistosomiasis vectors, such as B. straminea.

findingsUsing a combination of Illumina short-read, 10X Genomics linked-read, and Hi-C sequencing data, our 1.005 Gb B. straminea genome assembly is of high contiguity, with a scaffold N50 of 25.3 Mb. Transcriptomes from adults were also obtained. Developmental homeobox genes, hormonal genes, and stress-response genes were identified, and repeat content was annotated (40.68% of genomic content). Comparisons with other mollusc genomes (including Gastropoda, Bivalvia, and Cephalopoda) revealed syntenic conservation, patterns of homeobox gene linkage indicative of evolutionary changes to gene clusters, expansion of heat shock protein genes, and the presence of sesquiterpenoid and cholesterol metabolic pathway genes in Gastropoda. In addition, hormone treatment together with RT-qPCR assay reveal a sesquiterpenoid hormone responsive system in B. straminea, illustrating that this renowned insect hormonal system is also present in the lophotrochozoan lineage.

conclusionThis study provides the first genome assembly for the snail B. straminea and offers an unprecedented opportunity to address a variety of phenomena related to snail vectors of schistosomiasis, as well as evolutionary and genomics questions related to molluscs more widely.

Indexed as

BiomphalariaSchistosomiasisSchistosomiasis mansoniAnimalsDisease VectorsHumansSchistosoma mansoni

Identifiers

PMID35166339
PMCPMC8848322
OpenAlexW4213177138

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.