ArticleScientific data2022
A holistic genome dataset of bacteria, archaea and viruses of the Pearl River estuary.
Article in Scientific data, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed, 29 citations in OpenAlex.
- Novel roseophages provide insights into a genetically and ecologically diverse phage family.Microbial genomics · 2025Article
- Marine Autographiviridae phages exhibit high genetic diversity and global-scale biogeographic patterns.Communications biology · 2025Article
- Metagenomes and 1,313 metagenome-assembled genomes from a northern Gulf of Mexico coastal time series.Scientific data · 2025Article
- Isolation and characterization of a roseophage representing a novel genus in the N4-like Rhodovirinae subfamily distributed in estuarine waters.BMC genomics · 2025Article
- New isolates refine the ecophysiology of the Roseobacter CHAB-I-5 lineage.ISME communications · 2025Article
- Metabolic capacity is maintained despite shifts in microbial diversity in estuary sediments.ISME communications · 2025Article
- Diversity and distribution of a prevalent Microviridae group across the global oceans.Communications biology · 2024Article
- Novel phage infecting themSphere · 2024Article
- Exploring the Microbial Mosaic: Insights into Composition, Diversity, and Environmental Drivers in the Pearl River Estuary Sediments.Microorganisms · 2024Article
- Genome sequences of the firstMicrobial genomics · 2024Article
- Gene inversion led to the emergence of brackish archaeal heterotrophs in the aftermath of the Cryogenian Snowball Earth.PNAS nexus · 2024Article
- Machine learning and metagenomics identifies uncharacterized taxa inferred to drive biogeochemical cycles in a subtropical hypereutrophic estuary.ISME communications · 2024Article
- Metagenome sequencing and recovery of 444 metagenome-assembled genomes from the biofloc aquaculture system.Scientific data · 2023Article
- Large-scale phylogenomics of aquatic bacteria reveal molecular mechanisms for adaptation to salinity.Science advances · 2023Article
- Ecophysiology and genomics of the brackish water adapted SAR11 subclade IIIa.The ISME journal · 2023Article
- Trait biases in microbial reference genomes.Scientific data · 2023Article
- Genomic analysis and characterization of phages infecting the marineFrontiers in microbiology · 2023Article
- A novel long-tailed myovirus represents a new T4-like cyanophage cluster.Frontiers in microbiology · 2023Article
- Diversity, distribution, and functional potentials of magroviruses from marine and brackish waters.Frontiers in microbiology · 2023Article
- Mining of novel secondary metabolite biosynthetic gene clusters from acid mine drainage.Scientific data · 2022Article
Corrections and comments
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Authors and funding
6 authors at 4 institutions in 3 countries.
Funding
Abstract
Estuaries are one of the most important coastal ecosystems. While microbiomes and viromes have been separately investigated in some estuaries, few studies holistically deciphered the genomes and connections of viruses and their microbial hosts along an estuarine salinity gradient. Here we applied deep metagenomic sequencing on microbial and viral communities in surface waters of the Pearl River estuary, one of China's largest estuaries with strong anthropogenic impacts. Overall, 1,205 non-redundant prokaryotic genomes with ≥50% completeness and ≤10% contamination, and 78,502 non-redundant viral-like genomes were generated from samples of three size fractions and five salinity levels. Phylogenomic analysis and taxonomy classification show that majority of these estuarine prokaryotic and viral genomes are novel at species level according to public databases. Potential connections between the microbial and viral populations were further investigated by host-virus matching. These combined microbial and viral genomes provide an important complement of global marine genome datasets and should greatly facilitate our understanding of microbe-virus interactions, evolution and their implications in estuarine ecosystems.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.