Evidence map›Paper›PMID 35164671›Full record

ArticleClinical proteomics2022

Integrative omics reveals subtle molecular perturbations following ischemic conditioning in a porcine kidney transplant model.

Darragh P O'Brien, Adam M Thorne, Honglei Huang, Elisa Pappalardo, Xuan Yao, Peter Søndergaard Thyrrestrup, Kristian Ravlo, Niels Secher, Rikke Norregaard, Rutger J Ploeg and 2 more

Open access · goldAbstract read
In one paragraph

Article in Clinical proteomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 3 countries.

Darragh P O'Brien *Target Discovery Institute, Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK. darragh.obrien@ndm.ox.ac.uk.ORCID http://orcid.org/0000-0003-4924-7795
Adam M Thorne *Target Discovery Institute, Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK.
Honglei HuangTarget Discovery Institute, Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK.
Elisa PappalardoSir William Dunn School of Pathology, University of Oxford, Oxford, UK.
Xuan YaoTarget Discovery Institute, Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK.
Peter Søndergaard ThyrrestrupDepartment of Renal Medicine, Aarhus University Hospital, Aarhus, Denmark.
Kristian RavloDepartment of Renal Medicine, Aarhus University Hospital, Aarhus, Denmark.
Niels SecherDepartment of Clinical Medicine, Aarhus University, Aarhus, Denmark.
Rikke NorregaardDepartment of Renal Medicine, Aarhus University Hospital, Aarhus, Denmark.
Rutger J PloegNuffield Department of Surgical Sciences and Oxford Biomedical Research Centre, University of Oxford, Oxford, UK. rutger.ploeg@nds.ox.ac.uk.
Bente JespersenDepartment of Renal Medicine, Aarhus University Hospital, Aarhus, Denmark. bente.jespersen@clin.au.dk.
Benedikt M KesslerTarget Discovery Institute, Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, UK. benedikt.kessler@ndm.ox.ac.uk.ORCID http://orcid.org/0000-0002-8160-2446
University of Oxford · GBAarhus University · DKAalborg University Hospital · DKDiscovery Centre · CANuffield Orthopaedic Centre · GB

Funding

Medical Research Council MR/R014132/1
6 · The paper itself

Abstract

backgroundRemote Ischemic Conditioning (RIC) has been proposed as a therapeutic intervention to circumvent the ischemia/reperfusion injury (IRI) that is inherent to organ transplantation. Using a porcine kidney transplant model, we aimed to decipher the subclinical molecular effects of a RIC regime, compared to non-RIC controls.

methodsKidney pairs (n = 8 + 8) were extracted from brain dead donor pigs and transplanted in juvenile recipient pigs following a period of cold ischemia. One of the two kidney recipients in each pair was subjected to RIC prior to kidney graft reperfusion, while the other served as non-RIC control. We designed an integrative Omics strategy combining transcriptomics, proteomics, and phosphoproteomics to deduce molecular signatures in kidney tissue that could be attributed to RIC.

resultsIn kidney grafts taken out 10 h after transplantation we detected minimal molecular perturbations following RIC compared to non-RIC at the transcriptome level, which was mirrored at the proteome level. In particular, we noted that RIC resulted in suppression of tissue inflammatory profiles. Furthermore, an accumulation of muscle extracellular matrix assembly proteins in kidney tissues was detected at the protein level, which may be in response to muscle tissue damage and/or fibrosis. However, the majority of these protein changes did not reach significance (p < 0.05).

conclusionsOur data identifies subtle molecular phenotypes in porcine kidneys following RIC, and this knowledge could potentially aid optimization of remote ischemic conditioning protocols in renal transplantation.

Indexed as

InflammationIntegrative omicsKidney transplantationProteomicsRemote ischemic conditioningTranscriptomics

Identifiers

PMID35164671
PMCPMC8903695
OpenAlexW4220917970

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.