Evidence map›Paper›PMID 35164069›Full record

SynthesisMolecules (Basel, Switzerland)2022

Computational Analysis Reveals Monomethylated Triazolopyrimidine as a Novel Inhibitor of SARS-CoV-2 RNA-Dependent RNA Polymerase (RdRp).

Anandakrishnan Karthic, Veerbhan Kesarwani, Rahul Kunwar Singh, Pavan Kumar Yadav, Navaneet Chaturvedi, Pallavi Chauhan, Brijesh Singh Yadav, Sandeep Kumar Kushwaha

Open access · goldAbstract readMeta-Analysis
In one paragraph

Synthesis in Molecules (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 8 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 4 countries.

Anandakrishnan KarthicBioinformatics, DBT-National Institute of Animal Biotechnology (NIAB), Hyderabad 500032, India.
Veerbhan KesarwaniBioinformatics, DBT-National Institute of Animal Biotechnology (NIAB), Hyderabad 500032, India.ORCID 0000-0001-5778-6831
Rahul Kunwar SinghCyano Biotech Lab, Department of Microbiology, School of Life Sciences, Hemvati Nandan Bahuguna Garhwal University, Srinagar (Garhwal) 246174, India.ORCID 0000-0003-3630-5706
Pavan Kumar YadavDepartment of Veterinary Physiology and Biochemistry, Faculty of Veterinary and Animal Sciences, Banaras Hindu University, Mirzapur 231001, India.
Navaneet ChaturvediDepartment of Molecular and Cell Biology, Henry Wellcome Building, University of Leicester, Leicester LE1 7RH, UK.ORCID 0000-0002-4265-9255
Pallavi ChauhanDepartment of Biology, Lund University, 22370 Lund, Sweden.ORCID 0000-0002-5160-6673
Brijesh Singh YadavFaculty of Biosciences and Aquaculture, Nord University, N-8049 Bodø, Norway.
Sandeep Kumar KushwahaBioinformatics, DBT-National Institute of Animal Biotechnology (NIAB), Hyderabad 500032, India.
National Institute of Animal Biotechnology · INBanaras Hindu University · INHemwati Nandan Bahuguna Garhwal University · INLund University · SENord University · NOUniversity of Leicester · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The human population is still facing appalling conditions due to several outbreaks of Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) virus. The absence of specific drugs, appropriate vaccines for mutants, and knowledge of potential therapeutic agents makes this situation more difficult. Several 1, 2, 4-triazolo [1, 5-a] pyrimidine (TP)-derivative compounds were comprehensively studied for antiviral activities against RNA polymerase of HIV, HCV, and influenza viruses, and showed immense pharmacological interest. Therefore, TP-derivative compounds can be repurposed against the RNA-dependent RNA polymerase (RdRp) protein of SARS-CoV-2. In this study, a meta-analysis was performed to ensure the genomic variability and stability of the SARS-CoV-2 RdRp protein. The molecular docking of natural and synthetic TP compounds to RdRp and molecular dynamic (MD) simulations were performed to analyse the dynamic behaviour of TP compounds at the active site of the RdRp protein. TP compounds were also docked against other non-structural proteins (NSP1, NSP2, NSP3, NSP5, NSP8, NSP13, and NSP15) of SARS-CoV-2. Furthermore, the inhibition potential of TP compounds was compared with Remdesivir and Favipiravir drugs as a positive control. Additionally, TP compounds were analysed for inhibitory activity against SARS-CoV RdRp protein. This study demonstrates that TP analogues (monomethylated triazolopyrimidine and essramycin) represent potential lead molecules for designing an effective inhibitor to control viral replication. Furthermore, in vitro and in vivo studies will strengthen the use of these inhibitors as suitable drug candidates against SARS-CoV-2.

Indexed as

Adenosine MonophosphateAlanineAmidesCatalytic DomainComputational BiologyCoronavirus RNA-Dependent RNA PolymeraseCOVID-19COVID-19 Drug TreatmentHumansMolecular Docking SimulationMolecular Dynamics SimulationPyrazinesPyrimidinesRNA-Dependent RNA PolymeraseRNA, ViralSARS-CoV-21,2,4-triazolo(1,5-a)pyrimidineAdenosine MonophosphateAlanineAmidesCoronavirus RNA-Dependent RNA PolymerasefavipiravirPyrazinesPyrimidinesremdesivirRNA-Dependent RNA PolymeraseRNA, ViralTriazolesessramycinFavipiravirnon-structural proteins (NSP)RemdesivirRNA-dependent RNA polymerase (RdRp)SARS-CoV-2triazolopyrimidine

Identifiers

PMID35164069
PMCPMC8840377
OpenAlexW4210381663

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.