Evidence map›Paper›PMID 35163918›Full record

ArticleMolecules (Basel, Switzerland)2022

Phytochemical Compound Screening to Identify Novel Small Molecules against Dengue Virus: A Docking and Dynamics Study.

Mst Sharmin Sultana Shimu, Shafi Mahmud, Trina Ekwati Tallei, Saad Ahmed Sami, Ahmad Akroman Adam, Uzzal Kumar Acharjee, Gobindo Kumar Paul, Talha Bin Emran, Shahriar Zaman, Md Salah Uddin and 8 more

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. International journal of molecular sciences · 2024
    Article
  6. Computational Exploration ofBioinformatics and biology insights · 2024
    Article
  7. Article
  8. Article
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  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 8 institutions in 4 countries.

Mst Sharmin Sultana ShimuDepartment of Genetic Engineering and Biotechnology, University of Rajshahi, Rajshahi 6205, Bangladesh.
Shafi MahmudMicrobiology Laboratory, Department of Genetic Engineering and Biotechnology, University of Rajshahi, Rajshahi 6205, Bangladesh.ORCID 0000-0003-1604-8626
Trina Ekwati TalleiDepartment of Biology, Faculty of Mathematics and Natural Science, Sam Ratulangi University, Manado 95115, Indonesia.ORCID 0000-0002-7963-7527
Saad Ahmed SamiDepartment of Pharmacy, University of Chittagong, Chittagong 4331, Bangladesh.ORCID 0000-0002-0621-4523
Ahmad Akroman AdamDentistry Study Program, Faculty of Medicine, Sam Ratulangi University, Manado 95115, Indonesia.
Uzzal Kumar AcharjeeDepartment of Genetic Engineering and Biotechnology, University of Rajshahi, Rajshahi 6205, Bangladesh.
Gobindo Kumar PaulMicrobiology Laboratory, Department of Genetic Engineering and Biotechnology, University of Rajshahi, Rajshahi 6205, Bangladesh.ORCID 0000-0002-8707-199X
Talha Bin EmranDepartment of Pharmacy, BGC Trust University Bangladesh, Chittagong 4381, Bangladesh.ORCID 0000-0003-3188-2272
Shahriar ZamanMicrobiology Laboratory, Department of Genetic Engineering and Biotechnology, University of Rajshahi, Rajshahi 6205, Bangladesh.
Md Salah UddinMicrobiology Laboratory, Department of Genetic Engineering and Biotechnology, University of Rajshahi, Rajshahi 6205, Bangladesh.
Md Abu SalehMicrobiology Laboratory, Department of Genetic Engineering and Biotechnology, University of Rajshahi, Rajshahi 6205, Bangladesh.ORCID 0000-0001-5610-4763
Sultan AlshehriDepartment of Pharamaceutics, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia.ORCID 0000-0002-0922-9819
Mohammed M GhoneimDepartment of Pharmacy Practice, College of Pharamcy, AlMaarefa University, Ad Diriyah 13713, Saudi Arabia.ORCID 0000-0002-9179-4373
Maha AlruwaliDepartment of Pharmacy Practice, College of Pharamcy, AlMaarefa University, Ad Diriyah 13713, Saudi Arabia.
Ahmad J ObaidullahDrug Exploration and Development Chair (DEDC), Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia.
Nabilah Rahman JuiDepartment of Biochemistry and Biotechnology, University of Science and Technology, Chittagong 4202, Bangladesh.
Junghwan KimDepartment of Internal Medicine, College of Korean Medicine, Kyung Hee University, Seoul 02447, Korea.
Bonglee KimDepartment of Pathology, College of Korean Medicine, Kyung Hee University, Hoegidong Dongdaemungu, Seoul 05253, Korea.ORCID 0000-0002-8678-156X
University of Rajshahi · BDAlmaarefa UniversityKing Saud University · SAKyung Hee University · KRSam Ratulangi University · IDBGC Trust University Bangladesh · BDUniversity of Chittagong · BDUniversity of Science and Technology Chittagong · BD

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The spread of the Dengue virus over the world, as well as multiple outbreaks of different serotypes, has resulted in a large number of deaths and a medical emergency, as no viable medications to treat Dengue virus patients have yet been found. In this paper, we provide an in silico virtual screening and molecular dynamics-based analysis to uncover efficient Dengue infection inhibitors. Based on a Google search and literature mining, a large phytochemical library was generated and employed as ligand molecules. In this investigation, the protein target NS2B/NS3 from Dengue was employed, and around 27 compounds were evaluated in a docking study. Phellodendroside (-63 kcal/mole), quercimeritrin (-59.5 kcal/mole), and quercetin-7-

Indexed as

Molecular Docking SimulationMolecular Dynamics SimulationAntiviral AgentsDengueDengue VirusHigh-Throughput Screening AssaysHumansPhytochemicalsProtease InhibitorsSerine EndopeptidasesViral Nonstructural ProteinsViral ProteasesAntiviral Agentsnonstructural protein 2B, Dengue virusNS3 protease, dengue virusPhytochemicalsProtease InhibitorsSerine EndopeptidasesViral Nonstructural ProteinsViral ProteasesDengue virusmolecular dockingmolecular dynamicsNS2B/NS3 proteinphytochemicals

Identifiers

PMID35163918
PMCPMC8840231
OpenAlexW4205325198

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.