Evidence map›Paper›PMID 35157347›Full record

ArticleFASEB journal : official publication of the Federation of American Societies for Experimental Biology2022

Structural polymorphism of coiled-coils from the stalk domain of SARS-CoV-2 spike protein.

Zala Živič, Žiga Strmšek, Marko Novinec, Jurij Lah, San Hadži

Abstract read
In one paragraph

Article in FASEB journal : official publication of the Federation of American Societies for Experimental Biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Structural polymorphism of coiled-coils from the stalk domain of SARS-CoV-2 spike protein.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Zala ŽivičFaculty of Chemistry and Chemical Technology, University of Ljubljana, Ljubljana, Slovenia.ORCID https://orcid.org/0000-0001-9044-3064
Žiga StrmšekDepartment of Synthetic Biology and Immunology, National Institute of Chemistry, Ljubljana, Slovenia.
Marko NovinecFaculty of Chemistry and Chemical Technology, University of Ljubljana, Ljubljana, Slovenia.
Jurij LahFaculty of Chemistry and Chemical Technology, University of Ljubljana, Ljubljana, Slovenia.
San HadžiFaculty of Chemistry and Chemical Technology, University of Ljubljana, Ljubljana, Slovenia.ORCID https://orcid.org/0000-0002-5615-7918

Funding

Javna Agencija za Raziskovalno Dejavnost RS (ARRS) J1-1709Javna Agencija za Raziskovalno Dejavnost RS (ARRS) P1-0201
6 · The paper itself

Abstract

Spike trimer plays a key role in SARS-CoV-2 infection and vaccine development. It consists of a globular head and a flexible stalk domain that anchors the protein into the viral membrane. While the head domain has been extensively studied, the properties of the adjoining stalk are poorly understood. Here, we characterize the coiled-coil formation and thermodynamic stability of the stalk domain and its segments. We find that the N-terminal segment of the stalk does not form coiled-coils and remains disordered in solution. The C-terminal stalk segment forms a trimeric coiled-coil in solution, which becomes significantly stabilized in the context of the full-length stalk. Its crystal structure reveals a novel antiparallel tetramer coiled-coil with an unusual combination of a-d and e-a-d hydrophobic core packing. Structural analysis shows that a subset of hydrophobic residues stabilizes different coiled-coil structures: trimer, tetramer, and heterohexamer, underscoring a highly polymorphic nature of the SARS-CoV-2 stalk sequence.

Indexed as

Models, MolecularProtein DomainsAmino Acid SequenceCOVID-19CrystallizationCrystallography, X-RayHumansHydrophobic and Hydrophilic InteractionsProtein StabilityProtein Structure, SecondarySARS-CoV-2Scattering, Small AngleSpike Glycoprotein, CoronavirusTemperatureX-Ray DiffractionSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2coiled-coilSARS-CoV-2spikethermodynamicsX-ray

Identifiers

PMID35157347
PMCPMC9111298

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.