ArticlePlant physiology2022
Transcriptome and miRNAome analysis reveals components regulating tissue differentiation of bamboo shoots.
Article in Plant physiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed, 33 citations in OpenAlex.
- Multi-Omics Frontiers in Plant Adaptation and Growth: From Molecular Networks to Precision Breeding.Plants (Basel, Switzerland) · 2026Article
- Research Advances in MicroRNA-Mediated Regulation of Bamboo Organ Development.Plants (Basel, Switzerland) · 2026Review
- Research on Bamboo Shoot Bud Development: A Leap from Tissue Heterogeneity to Single-Cell Spatial Atlas.Plants (Basel, Switzerland) · 2026Review
- Single-nucleus and spatial transcriptomics reveal the cell populations of intercalary meristems in bamboo.Proceedings of the National Academy of Sciences of the United States of America · 2025Article
- Characterization, Expression Profile Analysis, and Functional Prediction ofPlants (Basel, Switzerland) · 2025Article
- The Transcriptome Analysis Provides New Insights into Signaling for Bamboo Shoot Development of Sympodial Bamboo.Foods (Basel, Switzerland) · 2025Article
- Interplay Between Phytohormones and Sugar Metabolism inPlants (Basel, Switzerland) · 2025Review
- Integrated Analysis of microRNAs and Transcription Factor Targets in Floral Transition ofPlants (Basel, Switzerland) · 2024Article
- Evolutionary relationship of moso bamboo forms and a multihormone regulatory cascade involving culm shape variation.Plant biotechnology journal · 2024Article
- The Construction of lncRNA/circRNA-miRNA-mRNA Networks Reveals Functional Genes Related to Growth Traits inInternational journal of molecular sciences · 2024Article
- Uncovering the miRNA-mediated regulatory network involved in Ma bamboo (Horticulture research · 2023Article
- Phytohormone Crosstalk of Cytokinin Biosynthesis and Signaling Family Genes in Moso Bamboo (International journal of molecular sciences · 2023Article
- Morphological and Anatomical Analysis of the Internodes of a New Dwarf Variant of Moso Bamboo,Plants (Basel, Switzerland) · 2023Article
- Identification and characterization of CircRNA-associated CeRNA networks in moso bamboo under nitrogen stress.BMC plant biology · 2023Article
- Network of miR396-mRNA in Tissue Differentiation in Moso Bamboo (Plants (Basel, Switzerland) · 2023Article
- Transcriptome Analysis to Identify Genes Related to Flowering Reversion in Tomato.International journal of molecular sciences · 2022Article
- The miR166-mRNA network regulates vascular tissue differentiation in Moso bamboo.Frontiers in genetics · 2022Article
- Revealing the mechanisms of the bioactive ingredients accumulation inFrontiers in plant science · 2022Article
- Integrative analyses of morphology, physiology, and transcriptional expression profiling reveal miRNAs involved in culm color in bamboo.Frontiers in plant science · 2022Article
Corrections and comments
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Authors and funding
7 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Primary thickening determines bamboo yield and wood property. However, little is known about the regulatory networks involved in this process. This study identified a total of 58,652 genes and 150 miRNAs via transcriptome and small RNA sequencing using the underground thickening shoot samples of wild-type (WT) Moso bamboo (Phyllostachys edulis) and a thick wall (TW) variant (P. edulis "Pachyloen") at five developmental stages (WTS1/TWS1-WTS5/TWS5). A total of 14,029 (65.17%) differentially expressed genes and 68 (45.33%) differentially expressed miRNAs were identified from the WT, TW, and WTTW groups. The first two groups were composed of four pairwise combinations, each between two successive stages (WTS2/TWS2_versus_WTS1/TWS1, WTS3/TWS3_versus_WTS2/TWS2, WTS4/TWS4_versus_WTS3/TWS3, and WTS5/TWS5_versus_WTS4/TWS4), and the WTTW group was composed of five combinations, each between two relative stages (TWS1-5_versus_WTS1-5). Additionally, among the phytohormones, zeatin showed more remarkable changes in concentrations than indole-3-acetic acid, gibberellic acid, and abscisic acid throughout the five stages in the WT and the TW groups. Moreover, 125 cleavage sites were identified for 387 miRNA-mRNA pairs via degradome sequencing (P < 0.05). The dual-luciferase reporter assay confirmed that 13 miRNAs bound to 12 targets. Fluorescence in situ hybridization localized miR166 and miR160 in the shoot apical meristem and the procambium of Moso bamboo shoots at the S1 stage. Thus, primary thickening is a complex process regulated by miRNA-gene-phytohormone networks, and the miRNAome and transcriptome dynamics regulate phenotypic plasticity. These findings provide insights into the molecular mechanisms underlying wood formation and properties and propose targets for bamboo breeding.
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