Evidence map›Paper›PMID 35156721›Full record

ArticleThe EMBO journal2022

PABP prevents the untimely decay of select mRNA populations in human cells.

Sam Kajjo, Sahil Sharma, Shan Chen, William R Brothers, Megan Cott, Benedeta Hasaj, Predrag Jovanovic, Ola Larsson, Marc R Fabian

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.5field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 26 citations in OpenAlex.

  1. Macrophage PABPC4-SPP1 Axis Orchestrates Immunosuppression in Colorectal Cancer.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
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  16. Tethered mRNA Amplifier: A Novel Approach to Increase Protein Expression.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
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  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Sam KajjoLady Davis Institute for Medical Research, Jewish General Hospital, Montreal, QC, Canada.ORCID 0000-0002-9289-881X
Sahil SharmaLady Davis Institute for Medical Research, Jewish General Hospital, Montreal, QC, Canada.ORCID 0000-0003-3829-0835
Shan ChenScience for Life Laboratory, Department of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden.
William R BrothersLady Davis Institute for Medical Research, Jewish General Hospital, Montreal, QC, Canada.ORCID 0000-0001-8962-7974
Megan CottLady Davis Institute for Medical Research, Jewish General Hospital, Montreal, QC, Canada.ORCID 0000-0003-4288-9605
Benedeta HasajLady Davis Institute for Medical Research, Jewish General Hospital, Montreal, QC, Canada.
Predrag JovanovicLady Davis Institute for Medical Research, Jewish General Hospital, Montreal, QC, Canada.
Ola LarssonScience for Life Laboratory, Department of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden.ORCID 0000-0003-1412-1308
Marc R FabianLady Davis Institute for Medical Research, Jewish General Hospital, Montreal, QC, Canada.ORCID 0000-0003-3700-7604
Jewish General Hospital · CAScience for Life Laboratory · SE

Funding

CIHR PJT-156356
6 · The paper itself

Abstract

Gene expression is tightly regulated at the levels of both mRNA translation and stability. The poly(A)-binding protein (PABP) is thought to play a role in regulating these processes by binding the mRNA 3' poly(A) tail and interacting with both the translation and mRNA deadenylation machineries. In this study, we directly investigate the impact of PABP on translation and stability of endogenous mRNAs in human cells. Remarkably, our transcriptome-wide analysis only detects marginal mRNA translation changes in PABP-depleted cells. In contrast, rapidly depleting PABP alters mRNA abundance and stability, albeit non-uniformly. Otherwise stable transcripts, including those encoding proteins with constitutive functions, are destabilized in PABP-depleted cells. In contrast, many unstable mRNAs, including those encoding proteins with regulatory functions, decay at similar rates in presence or absence of PABP. Moreover, PABP depletion-induced cell death can partially be suppressed by disrupting the mRNA decapping and 5'-3' decay machinery. Finally, we provide evidence that the LSM1-7 complex promotes decay of "stable" mRNAs in PABP-depleted cells. Taken together, these findings suggest that PABP plays an important role in preventing the untimely decay of select mRNA populations.

Indexed as

Gene Expression ProfilingCell DeathHumansRNA, MessengerRNA, MessengermRNA decappingmRNA decaymRNA translationPABPP-bodies

Identifiers

PMID35156721
PMCPMC8922270
OpenAlexW4212814600

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.