Evidence map›Paper›PMID 35156141›Full record

ArticleJournal of molecular modeling2022

In silico screening of potential β-secretase (BACE1) inhibitors from VIETHERB database.

Nguyen Thao Nhung, Nhung Duong, Huong Thi Thu Phung, Quan V Vo, Nguyen Minh Tam

Abstract read
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In one paragraph

Article in Journal of molecular modeling, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 3 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Nguyen Thao NhungNTT Hi-Tech Institute, Nguyen Tat Thanh University, Ho Chi Minh City, Vietnam.
Nhung DuongSchool of Biotechnology, International University, Ho Chi Minh City, Vietnam.
Huong Thi Thu PhungNTT Hi-Tech Institute, Nguyen Tat Thanh University, Ho Chi Minh City, Vietnam.
Quan V VoFaculty of Chemical Technology- Environment, The University of Danang - University of Technology and Education, Danang, Vietnam.
Nguyen Minh TamComputational Chemistry Research Group, Ton Duc Thang University, Ho Chi Minh City, Vietnam. nguyenminhtam@tdtu.edu.vn.ORCID http://orcid.org/0000-0003-3153-4606
Trường ĐH Nguyễn Tất Thành · VNTon Duc Thang University · VNUniversity of Da Nang · VNVietnam National University Ho Chi Minh City · VN

Funding

the VinGroup Innovation Foundation (VINIF) DA120_15062019/year 2019
6 · The paper itself

Abstract

For the purpose of discovering potential inhibitors of β-amyloid (BACE1), which is a crucial element in Alzheimer's disease (AD) pathogenesis, an in silico study of naturally occurring compounds was performed using precise computational approaches. Autodock4 package was preliminary used to predict the binding affinities to BACE1 of more than four thousand compounds presented in the Vietnamese plants (VIETHERB) database. Based on docking results, twenty top-lead compounds having the largest docking energy to BACE1 were rigorously examined using steered molecular dynamics (SMD) simulations. Interestingly, SMD results found that the binding affinity values of three compounds, including myricetin 3-O-(3''-galloylrhamnopyranoside), quercetin 3-O-neohesperidoside, and hydroxysafflor yellow A, are remarkably higher than that of the well-known BACE1 inhibitor, 23I, and these compounds can thus be considered the promising candidates for inhibitors of BACE1.

Indexed as

Alzheimer DiseaseAmyloid Precursor Protein SecretasesEnzyme InhibitorsAmyloid beta-PeptidesAspartic Acid EndopeptidasesDatabases, FactualDrug Evaluation, PreclinicalHumansMolecular Docking SimulationMolecular Dynamics SimulationAmyloid beta-PeptidesAmyloid Precursor Protein SecretasesAspartic Acid EndopeptidasesBACE1 protein, humanEnzyme InhibitorsAlzheimer’s diseaseMolecular dynamicsVirtual screening

Identifiers

PMID35156141
OpenAlexW4212897466

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.