Evidence map›Paper›PMID 35155377›Full record

ArticleFrontiers in chemistry2021

SOMSpec as a General Purpose Validated Self-Organising Map Tool for Rapid Protein Secondary Structure Prediction From Infrared Absorbance Data.

Marco Pinto Corujo, Adewale Olamoyesan, Anastasiia Tukova, Dale Ang, Erik Goormaghtigh, Jason Peterson, Victor Sharov, Nikola Chmel, Alison Rodger

Abstract read
In one paragraph

Article in Frontiers in chemistry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Marco Pinto CorujoDepartment of Chemistry, University of Warwick, Coventry, United Kingdom.
Adewale OlamoyesanDepartment of Molecular Sciences, Macquarie University, Sydney, NSW, Australia.
Anastasiia TukovaDepartment of Molecular Sciences, Macquarie University, Sydney, NSW, Australia.
Dale AngDepartment of Molecular Sciences, Macquarie University, Sydney, NSW, Australia.
Erik GoormaghtighCenter for Structural Biology and Bioinformatics, Laboratory for the Structure and Function of Biological Membranes, Campus Plaine, Université Libre de Bruxelles, Brussels, Belgium.
Jason PetersonBioPharmaSpec Inc., Malvern, PA, United States.
Victor SharovBioPharmaSpec Inc., Malvern, PA, United States.
Nikola ChmelDepartment of Chemistry, University of Warwick, Coventry, United Kingdom.
Alison RodgerDepartment of Chemistry, University of Warwick, Coventry, United Kingdom.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A protein's structure is the key to its function. As protein structure can vary with environment, it is important to be able to determine it over a wide range of concentrations, temperatures, formulation vehicles, and states. Robust reproducible validated methods are required for applications including batch-batch comparisons of biopharmaceutical products. Circular dichroism is widely used for this purpose, but an alternative is required for concentrations above 10 mg/mL or for solutions with chiral buffer components that absorb far UV light. Infrared (IR) protein absorbance spectra of the Amide I region (1,600-1700 cm

Indexed as

infrared absorbanceproteinsecondary structureself-organising mapvalidation

Identifiers

PMID35155377
PMCPMC8830495

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.