Evidence map›Paper›PMID 35154118›Full record

ArticleFrontiers in immunology2022

Deep Phenotypic Analysis of Blood and Lymphoid T and NK Cells From HIV+ Controllers and ART-Suppressed Individuals.

Ashley F George, Xiaoyu Luo, Jason Neidleman, Rebecca Hoh, Poonam Vohra, Reuben Thomas, Min-Gyoung Shin, Madeline J Lee, Catherine A Blish, Steven G Deeks and 3 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  10. An angel or a devil? Current view on the role of CD8Journal of translational medicine · 2024
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Cytolytic CD8Science immunology · 2023
    Article
  17. Advances in HIV Research Using Mass Cytometry.Current HIV/AIDS reports · 2023
    Review
  18. HIV post-treatment controllers have distinct immunological and virological features.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Ashley F GeorgeGladstone Institute of Virology, San Francisco, CA, United States.
Xiaoyu LuoGladstone Institute of Virology, San Francisco, CA, United States.
Jason NeidlemanGladstone Institute of Virology, San Francisco, CA, United States.
Rebecca HohDivision of HIV, Infectious Diseases and Global Medicine, University of California San Francisco, San Francisco, CA, United States.
Poonam VohraDepartment of Pathology, University of California San Francisco, San Francisco, CA, United States.
Reuben ThomasGladstone Institutes, San Francisco, CA, United States.
Min-Gyoung ShinGladstone Institutes, San Francisco, CA, United States.
Madeline J LeeDepartment of Medicine, Stanford University School of Medicine, Stanford, CA, United States.
Catherine A BlishDepartment of Medicine, Stanford University School of Medicine, Stanford, CA, United States.
Steven G DeeksDivision of HIV, Infectious Diseases and Global Medicine, University of California San Francisco, San Francisco, CA, United States.
Warner C GreeneGladstone Institute of Virology, San Francisco, CA, United States.
Sulggi A LeeZuckerberg San Francisco General Hospital and the University of California San Francisco, San Francisco, CA, United States.
Nadia R RoanGladstone Institute of Virology, San Francisco, CA, United States.
Gladstone Institutes · USUniversity of California, San Francisco · USStanford Medicine · USUniversity of California System · US

Funding

HOPE - HIV Obstruction by Programmed EpigeneticsUM1AI164559 · NIAID · J. DAVID GLADSTONE INSTITUTES · PI Lishomwa C Ndhlovu, Melanie Maria Ott · 2021 to 2026
$32.2M
Collaboratory of AIDS Researchers for Eradication (CARE)UM1AI164567 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DAVID M. MARGOLIS · 2021 to 2026
$31.6M
Research BaseP30DK063720 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GERMAN, MICHAEL S · 2003 to 2019
$21.8M
MOLECULAR AND CELLULAR IMMUNOLOGYT32AI007334 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CYSTER, JASON G · 1988 to 2023
$11.0M
Project 3: Identifying plasma biomarkers predicting time to HIV rebound after treatment interruptionP01AI131374 · NIAID · J. DAVID GLADSTONE INSTITUTES · PI ROAN, NADIA R · 2017 to 2021
$8.5M
Phenotypic and mechanistic analysis of the in vivo HIV latent reservoir by single-cell technologiesR01AI147777 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ROAN, NADIA R · 2019 to 2022
$3.8M
UCSF DVS CyTOF Mass CytometerS10OD018040 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LANIER, LEWIS LEE · 2014 to 2014
$600k
NIAID NIH HHS P01 AI131374NIAID NIH HHS R01 AI147777NIAID NIH HHS T32 AI007334NIAID NIH HHS UM1 AI164559NIAID NIH HHS UM1 AI164567NIDDK NIH HHS P30 DK063720NIH HHS S10 OD018040
6 · The paper itself

Abstract

T and natural killer (NK) cells are effector cells with key roles in anti-HIV immunity, including in lymphoid tissues, the major site of HIV persistence. However, little is known about the features of these effector cells from people living with HIV (PLWH), particularly from those who initiated antiretroviral therapy (ART) during acute infection. Our study design was to use 42-parameter CyTOF to conduct deep phenotyping of paired blood- and lymph node (LN)-derived T and NK cells from three groups of HIV+ aviremic individuals: elite controllers (N = 5), and ART-suppressed individuals who had started therapy during chronic (N = 6) vs. acute infection (N = 8), the latter of which is associated with better outcomes. We found that acute-treated individuals are enriched for specific subsets of T and NK cells, including blood-derived CD56-CD16+ NK cells previously associated with HIV control, and LN-derived CD4+ T follicular helper cells with heightened expansion potential. An in-depth comparison of the features of the cells from blood vs. LNs of individuals from our cohort revealed that T cells from blood were more activated than those from LNs. By contrast, LNs were enriched for follicle-homing CXCR5+ CD8+ T cells, which expressed increased levels of inhibitory receptors and markers of survival and proliferation as compared to their CXCR5- counterparts. In addition, a subset of memory-like CD56

Indexed as

PhenotypeSustained Virologic ResponseAdultAgedAnti-Retroviral AgentsCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesFemaleHIV-1HIV InfectionsHumansKiller Cells, NaturalLeukocytesLymphocytesMaleMiddle AgedAnti-Retroviral AgentscontrollersCXCR5CyTOF/mass cytometryHIVlymph nodeNK cellsT cells

Identifiers

PMID35154118
PMCPMC8829545
OpenAlexW4210704586

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.