Evidence map›Paper›PMID 35153640›Full record

ArticleJournal of applied crystallography2022

Co-flow injection for serial crystallography at X-ray free-electron lasers.

Diandra Doppler, Mohammad T Rabbani, Romain Letrun, Jorvani Cruz Villarreal, Dai Hyun Kim, Sahir Gandhi, Ana Egatz-Gomez, Mukul Sonker, Joe Chen, Faisal H M Koua and 56 more

Abstract read
In one paragraph

Article in Journal of applied crystallography, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

66 authors.

Diandra DopplerSchool of Molecular Sciences, Arizona State University, Tempe, Arizona, USA.ORCID https://orcid.org/0000-0002-3586-3936
Mohammad T RabbaniSchool of Molecular Sciences, Arizona State University, Tempe, Arizona, USA.ORCID https://orcid.org/0000-0001-7967-9148
Romain LetrunEuropean XFEL, Schenefeld, Germany.ORCID https://orcid.org/0000-0002-0569-5193
Jorvani Cruz VillarrealSchool of Molecular Sciences, Arizona State University, Tempe, Arizona, USA.ORCID https://orcid.org/0000-0002-6762-7348
Dai Hyun KimSchool of Molecular Sciences, Arizona State University, Tempe, Arizona, USA.
Sahir GandhiSchool of Molecular Sciences, Arizona State University, Tempe, Arizona, USA.
Ana Egatz-GomezSchool of Molecular Sciences, Arizona State University, Tempe, Arizona, USA.
Mukul SonkerSchool of Molecular Sciences, Arizona State University, Tempe, Arizona, USA.
Joe ChenDepartment of Physics, Arizona State University, Tempe, Arizona, USA.
Faisal H M KouaCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany.ORCID https://orcid.org/0000-0001-8371-9587
Jayhow YangCenter for Applied Structural Discovery, Biodesign Institute, Arizona State University, Tempe, Arizona, USA.
Mohamed YoussefCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany.
Victoria MazalovaCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany.
Saša BajtHamburg Center for Ultrafast Imaging, Hamburg, Germany.ORCID https://orcid.org/0000-0002-7163-7602
Megan L ShelbyLawrence Livermore National Laboratory (LLNL), Livermore, California, USA.ORCID https://orcid.org/0000-0001-6984-957X
Matt A ColemanLawrence Livermore National Laboratory (LLNL), Livermore, California, USA.
Max O WiedornCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany.ORCID https://orcid.org/0000-0002-0856-2695
Juraj KnoskaCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany.ORCID https://orcid.org/0000-0001-7258-6256
Silvan SchönCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany.
Tokushi SatoEuropean XFEL, Schenefeld, Germany.ORCID https://orcid.org/0000-0003-3155-3487
Mark S HunterLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, California, USA.
Ahmad HosseinizadehDepartment of Physics, University of Wisconsin-Milwaukee, Milwaukee, Wisconsin, USA.
Christopher KuptizLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, California, USA.
Reza NazariCenter for Applied Structural Discovery, Biodesign Institute, Arizona State University, Tempe, Arizona, USA.ORCID https://orcid.org/0000-0002-8388-1397
Roberto C AlvarezCenter for Applied Structural Discovery, Biodesign Institute, Arizona State University, Tempe, Arizona, USA.
Konstantinos KarposCenter for Applied Structural Discovery, Biodesign Institute, Arizona State University, Tempe, Arizona, USA.ORCID https://orcid.org/0000-0002-3525-521X
Sahba ZaareCenter for Applied Structural Discovery, Biodesign Institute, Arizona State University, Tempe, Arizona, USA.
Zachary DobsonSchool of Molecular Sciences, Arizona State University, Tempe, Arizona, USA.ORCID https://orcid.org/0000-0003-4951-1701
Erin DisciannoCenter for Applied Structural Discovery, Biodesign Institute, Arizona State University, Tempe, Arizona, USA.
Shangji ZhangSchool of Molecular Sciences, Arizona State University, Tempe, Arizona, USA.
James D ZookSchool of Molecular Sciences, Arizona State University, Tempe, Arizona, USA.
Johan BieleckiEuropean XFEL, Schenefeld, Germany.
Raphael de WijnEuropean XFEL, Schenefeld, Germany.ORCID https://orcid.org/0000-0002-8342-1008
Adam R RoundEuropean XFEL, Schenefeld, Germany.ORCID https://orcid.org/0000-0002-0723-8228
Patrik VagovicEuropean XFEL, Schenefeld, Germany.
Marco KloosEuropean XFEL, Schenefeld, Germany.ORCID https://orcid.org/0000-0002-8745-9740
Mohammad VakiliEuropean XFEL, Schenefeld, Germany.ORCID https://orcid.org/0000-0001-9776-0177
Gihan K KetawalaSchool of Molecular Sciences, Arizona State University, Tempe, Arizona, USA.
Natasha E StanderSchool of Molecular Sciences, Arizona State University, Tempe, Arizona, USA.
Tien L OlsonSchool of Molecular Sciences, Arizona State University, Tempe, Arizona, USA.
Katherine MorinCenter for Applied Structural Discovery, Biodesign Institute, Arizona State University, Tempe, Arizona, USA.
Jyotirmory MondalDepartment of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee, USA.
Jonathan NguyenSchool of Molecular Sciences, Arizona State University, Tempe, Arizona, USA.
José Domingo Meza-AguilarCenter for Applied Structural Discovery, Biodesign Institute, Arizona State University, Tempe, Arizona, USA.
Gerdenis KodisSchool of Molecular Sciences, Arizona State University, Tempe, Arizona, USA.
Sara VaianaDepartment of Physics, Arizona State University, Tempe, Arizona, USA.
Jose M Martin-GarciaCenter for Applied Structural Discovery, Biodesign Institute, Arizona State University, Tempe, Arizona, USA.
Valerio MarianiCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany.ORCID https://orcid.org/0000-0001-7611-5128
Peter SchwanderDepartment of Physics, University of Wisconsin-Milwaukee, Milwaukee, Wisconsin, USA.ORCID https://orcid.org/0000-0003-2350-8838
Marius SchmidtDepartment of Physics, University of Wisconsin-Milwaukee, Milwaukee, Wisconsin, USA.
Marc MesserschmidtSchool of Molecular Sciences, Arizona State University, Tempe, Arizona, USA.
Abbas OurmazdDepartment of Physics, University of Wisconsin-Milwaukee, Milwaukee, Wisconsin, USA.ORCID https://orcid.org/0000-0001-9946-3889
Nadia ZatsepinCenter for Applied Structural Discovery, Biodesign Institute, Arizona State University, Tempe, Arizona, USA.ORCID https://orcid.org/0000-0003-1757-0205
Uwe WeierstallCenter for Applied Structural Discovery, Biodesign Institute, Arizona State University, Tempe, Arizona, USA.
Barry D BruceDepartment of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee, USA.ORCID https://orcid.org/0000-0002-4045-9815
Adrian P MancusoEuropean XFEL, Schenefeld, Germany.ORCID https://orcid.org/0000-0003-1710-8969
Thomas GrantDepartment of Structural Biology, Jacobs School of Medicine and Biomedical Sciences, SUNY University at Buffalo, Buffalo, New York, USA.
Anton BartyCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany.
Henry N ChapmanCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany.ORCID https://orcid.org/0000-0002-4655-1743
Matthias FrankLawrence Livermore National Laboratory (LLNL), Livermore, California, USA.
Raimund FrommeSchool of Molecular Sciences, Arizona State University, Tempe, Arizona, USA.
John C H SpenceCenter for Applied Structural Discovery, Biodesign Institute, Arizona State University, Tempe, Arizona, USA.ORCID https://orcid.org/0000-0001-6049-3925
Sabine BothaCenter for Applied Structural Discovery, Biodesign Institute, Arizona State University, Tempe, Arizona, USA.
Petra FrommeSchool of Molecular Sciences, Arizona State University, Tempe, Arizona, USA.
Richard A KirianCenter for Applied Structural Discovery, Biodesign Institute, Arizona State University, Tempe, Arizona, USA.
Alexandra RosSchool of Molecular Sciences, Arizona State University, Tempe, Arizona, USA.

Funding

Technology development for biological imaging with x-ray free electron lasersR01GM117342 · NIGMS · LAWRENCE LIVERMORE NATIONAL SECURITY, LLC · PI FRANK, MATTHIAS · 2016 to 2024
$4.8M
Femtosecond nano-crystallography of membrane proteinsR01GM095583 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI FROMME, PETRA · 2010 to 2023
$4.3M
Conformational dynamics, binding and aggregation of intrinsically disordered proteinsR01GM120537 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI VAIANA, SARA M. · 2017 to 2021
$1.4M
3D NanoprinterS10OD021816 · OD · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI SPENCE, JOHN CHARLES · 2016 to 2016
$659k
NIGMS NIH HHS R01 GM095583NIGMS NIH HHS R01 GM120537NIH HHS S10 OD021816
6 · The paper itself

Abstract

Serial femtosecond crystallography (SFX) is a powerful technique that exploits X-ray free-electron lasers to determine the structure of macro-molecules at room temperature. Despite the impressive exposition of structural details with this novel crystallographic approach, the methods currently available to introduce crystals into the path of the X-ray beam sometimes exhibit serious drawbacks. Samples requiring liquid injection of crystal slurries consume large quantities of crystals (at times up to a gram of protein per data set), may not be compatible with vacuum configurations on beamlines or provide a high background due to additional sheathing liquids present during the injection. Proposed and characterized here is the use of an immiscible inert oil phase to supplement the flow of sample in a hybrid microfluidic 3D-printed co-flow device. Co-flow generation is reported with sample and oil phases flowing in parallel, resulting in stable injection conditions for two different resin materials experimentally. A numerical model is presented that adequately predicts these flow-rate conditions. The co-flow generating devices reduce crystal clogging effects, have the potential to conserve protein crystal samples up to 95% and will allow degradation-free light-induced time-resolved SFX.

Indexed as

3D printingmicrofluidic devicessample consumptionserial crystallographyviscous mediaXFELsX-ray free-electron lasers

Identifiers

PMID35153640
PMCPMC8805165

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.