Evidence map›Paper›PMID 35153593›Full record

ArticleProceedings. Mathematical, physical, and engineering sciences2021

Biomembranes undergo complex, non-axisymmetric deformations governed by Kirchhoff-Love kinematicsand revealed by a three-dimensional computational framework.

Debabrata Auddya, Xiaoxuan Zhang, Rahul Gulati, Ritvik Vasan, Krishna Garikipati, Padmini Rangamani, Shiva Rudraraju

Open access · hybridAbstract read
In one paragraph

Article in Proceedings. Mathematical, physical, and engineering sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.1field-weighted citation impact, top 57% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 citations in OpenAlex.

  1. Article
  2. Article
  3. Generation of nanoscopic membrane curvature for membrane trafficking.Nature reviews. Molecular cell biology · 2023
    Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Debabrata AuddyaDepartment of Mechanical Engineering, University of Wisconsin-Madison, Madison, WI 53706, USA.
Xiaoxuan ZhangDepartment of Mechanical Engineering, University of Michigan, Ann Arbor, MI 48109, USA.ORCID 0000-0002-0844-5712
Rahul GulatiDepartment of Mechanical Engineering, University of Wisconsin-Madison, Madison, WI 53706, USA.
Ritvik VasanDepartment of Mechanical and Aerospace Engineering, University of California San Diego, La Jolla, CA 92093, USA.
Krishna GarikipatiDepartment of Mechanical Engineering, University of Michigan, Ann Arbor, MI 48109, USA.
Padmini RangamaniDepartment of Mechanical and Aerospace Engineering, University of California San Diego, La Jolla, CA 92093, USA.
Shiva RudrarajuDepartment of Mechanical Engineering, University of Wisconsin-Madison, Madison, WI 53706, USA.ORCID 0000-0002-8313-0198
University of Wisconsin–Madison · USUniversity of California San Diego · USUniversity of Michigan · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biomembranes play a central role in various phenomena like locomotion of cells, cell-cell interactions, packaging and transport of nutrients, transmission of nerve impulses, and in maintaining organelle morphology and functionality. During these processes, the membranes undergo significant morphological changes through deformation, scission, and fusion. Modelling the underlying mechanics of such morphological changes has traditionally relied on reduced order axisymmetric representations of membrane geometry and deformation. Axisymmetric representations, while robust and extensively deployed, suffer from their inability to model-symmetry breaking deformations and structural bifurcations. To address this limitation, a three-dimensional computational mechanics framework for high fidelity modelling of biomembrane deformation is presented. The proposed framework brings together Kirchhoff-Love thin-shell kinematics, Helfrich-energy-based mechanics, and state-of-the-art numerical techniques for modelling deformation of surface geometries. Lipid bilayers are represented as spline-based surface discretizations immersed in a three-dimensional space; this enables modelling of a wide spectrum of membrane geometries, boundary conditions, and deformations that are physically admissible in a three-dimensional space. The mathematical basis of the framework and its numerical machinery are presented, and their utility is demonstrated by modelling three classical, yet non-trivial, membrane deformation problems: formation of tubular shapes and their lateral constriction, Piezo1-induced membrane footprint generation and gating response, and the budding of membranes by protein coats during endocytosis. For each problem, the full three-dimensional membrane deformation is captured, potential symmetry-breaking deformation paths identified, and various case studies of boundary and load conditions are presented. Using the endocytic vesicle budding as a case study, we also present a 'phase diagram' for its symmetric and broken-symmetry states.

Indexed as

biomembranesendocytosisFEMisogeometric analysisKirchhoff-Lovenon-axisymmetric

Identifiers

PMID35153593
PMCPMC8580429
OpenAlexW3123471081

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.