Evidence map›Paper›PMID 35151326›Full record

ArticleBMC veterinary research2022

Molecular characterization of African swine fever viruses from Burkina Faso, 2018.

Moctar Sidi, Habibata Lamouni Zerbo, Bruno Lalidia Ouoba, Tirumala Bharani K Settypalli, Gregorie Bazimo, Hamidou Sandaogo Ouandaogo, Boubacar N'paton Sie, Ilboudo Sidwatta Guy, Drabo Dji-Tombo Adama, Joseph Savadogo and 5 more

Open access · goldAbstract read
In one paragraph

Article in BMC veterinary research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Review
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  5. Tick-Borne Diseases of Humans and Animals in West Africa.Pathogens (Basel, Switzerland) · 2023
    Review
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  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 3 countries.

Moctar SidiLaboratoire National d'Elevage, Ouagadougou, Burkina Faso.
Habibata Lamouni ZerboLaboratoire National d'Elevage, Ouagadougou, Burkina Faso. habiouermi@gmail.com.
Bruno Lalidia OuobaLaboratoire National d'Elevage, Ouagadougou, Burkina Faso.
Tirumala Bharani K SettypalliAnimal Production and Health Laboratory, Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Vienna, Austria.
Gregorie BazimoLaboratoire National d'Elevage, Ouagadougou, Burkina Faso.
Hamidou Sandaogo OuandaogoLaboratoire National d'Elevage, Ouagadougou, Burkina Faso.
Boubacar N'paton SieLaboratoire National d'Elevage, Ouagadougou, Burkina Faso.
Ilboudo Sidwatta GuyDirection Générale Des Services Vétérinaire, Ouagadougou, Burkina Faso.
Drabo Dji-Tombo AdamaLaboratoire National d'Elevage, Ouagadougou, Burkina Faso.
Joseph SavadogoDirection Générale Des Services Vétérinaire, Ouagadougou, Burkina Faso.
Anne Kabore-OuedraogoLaboratoire National d'Elevage, Ouagadougou, Burkina Faso.
Marietou Guitti KindoLaboratoire National d'Elevage, Ouagadougou, Burkina Faso.
Jenna E AchenbachBattelle Memorial Institute, 1001 Research Park blvd, Charlottesville, VA, 22901, USA.
Giovanni CattoliAnimal Production and Health Laboratory, Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Vienna, Austria.
Charles E LamienAnimal Production and Health Laboratory, Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Vienna, Austria.
International Atomic Energy Agency · ATDirection Générale de la Pharmacie, du Médicament et des Laboratoires · BFBattelle · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAfrican swine fever (ASF) is a viral hemorrhagic disease of domestic and wild swine. ASF has been endemic in Burkina Faso since 2003. In October 2018, substantial pig deaths occurred in Ouagadougou and two neighboring municipalities in central Burkina Faso. Following these mortalities, the veterinary extension services carried out investigations to begin control measures and collect samples.

methodsWe performed real-time PCR for diagnostic confirmation and molecular characterization of the virus based on the partial P72, the complete p54, the partial CD2v, and partial B602L genes.

resultsThe field study revealed that mortalities started two weeks before our investigations. The real-time PCR results confirmed ASFV DNA in twenty samples out of sixty-two blood samples collected in four different locations. The sequencing and phylogenetic analysis showed that ASFVs causing these outbreaks belong to genotype I and serogroup 4. The study of the CVR showed 4 TRS variants, and that of the CD2v amino acid sequence revealed five variants based on the number of deleted KCPPPK motifs in the C-terminal proline-reach region of the protein.

conclusionsThe existence of multiple variants in these outbreaks shows the importance of molecular characterization to understand the evolution of ASFV isolates and the link between epidemics.

Indexed as

African Swine FeverAfrican Swine Fever VirusSwine DiseasesAnimalsBurkina FasoDisease OutbreaksGenotypePhylogenySequence Analysis, DNASwineAfrican swine feverB602LB646LBurkina FasoCentral variable regionE183L

Identifiers

PMID35151326
PMCPMC8840682
OpenAlexW4211100356

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.