Evidence map›Paper›PMID 35149530›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2022

Single-Cell Transcriptional Profiling Reveals Signatures of Helper, Effector, and Regulatory MAIT Cells during Homeostasis and Activation.

Charles Kyriakos Vorkas, Chirag Krishna, Kelin Li, Jeffrey Aubé, Daniel W Fitzgerald, Linas Mazutis, Christina S Leslie, Michael S Glickman

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed, 1 pooled it
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 1 synthesis or guideline pooled it, 50 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Mucosal-Associated Invariant T Cells in Rheumatic Diseases.Arthritis & rheumatology (Hoboken, N.J.) · 2026
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Review
  14. Review
  15. Article
  16. Review
  17. Human MAIT cell response profiles biased toward IL-17 or IL-10 are distinct effector states directed by the cytokine milieu.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  18. Review
  19. Integrative mapping of human CD8Nature methods · 2025
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Charles Kyriakos VorkasDivision of Infectious Diseases, Weill Cornell Medicine, Cornell University, New York, NY.ORCID 0000-0003-4952-7041
Chirag KrishnaComputational and Systems Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY.
Kelin LiDivision of Chemical Biology and Medicinal Chemistry, UNC Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, Chapel Hill, NC.ORCID 0000-0002-8630-2928
Jeffrey AubéDivision of Chemical Biology and Medicinal Chemistry, UNC Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, Chapel Hill, NC.ORCID 0000-0003-1049-5767
Daniel W FitzgeraldDivision of Infectious Diseases, Weill Cornell Medicine, Cornell University, New York, NY.
Linas MazutisSingle Cell Research Initiative, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY; and.ORCID 0000-0002-5552-6427
Christina S LeslieComputational and Systems Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY; cleslie@cbio.mskcc.org glickmam@mskcc.org.
Michael S GlickmanImmunology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY; cleslie@cbio.mskcc.org glickmam@mskcc.org.ORCID 0000-0001-7918-5164
Memorial Sloan Kettering Cancer Center · USUniversity of North Carolina at Chapel Hill · USCornell University · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Viable but Nonculturable MtbU19AI111143 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI GLICKMAN, MICHAEL S, NATHAN, CARL FRANCIS · 2014 to 2020
$48.6M
Pharmacology & ImmunoPathology (PIP) CoreU19AI162568 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI EHRT, SABINE · 2021 to 2025
$13.0M
Tumor-specific T cell state dynamics and heterogeneity in early tumorigenesisU54CA209975 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI LESLIE, CHRISTINA S, RUDENSKY, ALEXANDER Y · 2016 to 2021
$11.8M
T32: Pathogenesis of Infectious Diseases Training ProgramT32AI007613 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI ROY M. GULICK · 1999 to 2026
$8.8M
The role of Mucosal-associated invariant T (MAIT) cells during the innate immune response to Mycobacterium tuberculosisK08AI132739 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI VORKAS, CHARLES KYRIAKOS · 2018 to 2022
$921k
NCI NIH HHS P30 CA008748NCI NIH HHS U54 CA209975NIAID NIH HHS K08 AI132739NIAID NIH HHS U19 AI111143NIAID NIH HHS U19 AI162568
6 · The paper itself

Abstract

Mucosal-associated invariant T (MAIT) cells are innate-like lymphocytes that recognize microbial vitamin B metabolites and have emerging roles in infectious disease, autoimmunity, and cancer. Although MAIT cells are identified by a semi-invariant TCR, their phenotypic and functional heterogeneity is not well understood. Here we present an integrated single cell transcriptomic analysis of over 76,000 human MAIT cells during early and prolonged Ag-specific activation with the MR1 ligand 5-OP-RU and nonspecific TCR stimulation. We show that MAIT cells span a broad range of homeostatic, effector, helper, tissue-infiltrating, regulatory, and exhausted phenotypes, with distinct gene expression programs associated with CD4

Indexed as

CD4-Positive T-LymphocytesCD8-Positive T-LymphocytesCell ProliferationCells, CulturedForkhead Transcription FactorsGene Expression ProfilingGranzymesHomeostasisHumansInterferon-gammaLymphocyte ActivationMucosal-Associated Invariant T CellsMycobacterium tuberculosisReceptors, Antigen, T-CellRibitolSingle-Cell Analysis5-(2-oxopropylideneamino)-6-d-ribitylaminouracilForkhead Transcription FactorsFoxp3 protein, mouseGranzymesGzmb protein, mouseIFNG protein, mouseInterferon-gammaReceptors, Antigen, T-CellRibitolTnf protein, mouseTumor Necrosis Factor-alphaUracil

Identifiers

PMID35149530
PMCPMC9012082
OpenAlexW4211180545

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.