Evidence map›Paper›PMID 35147499›Full record

ArticleeLife2022

The MIDAS domain of AAA mechanoenzyme Mdn1 forms catch bonds with two different substrates.

Keith J Mickolajczyk, Paul Dominic B Olinares, Brian T Chait, Shixin Liu, Tarun M Kapoor

Open access · goldAbstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. The Energetic Landscape of Catch Bonds in TCR Interfaces.Journal of immunology (Baltimore, Md. : 1950) · 2023
    Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Keith J MickolajczykLaboratory of Chemistry and Cell Biology, The Rockefeller University, New York, United States.ORCID 0000-0001-9445-0325
Paul Dominic B OlinaresLaboratory of Mass Spectrometry and Gaseous Ion Chemistry, The Rockefeller University, New York, United States.
Brian T ChaitLaboratory of Mass Spectrometry and Gaseous Ion Chemistry, The Rockefeller University, New York, United States.
Shixin LiuLaboratory of Nanoscale Biophysics and Biochemistry, The Rockefeller University, New York, United States.ORCID 0000-0003-4238-7066
Tarun M KapoorLaboratory of Chemistry and Cell Biology, The Rockefeller University, New York, United States.ORCID 0000-0003-0628-211X
Rockefeller University · US

Funding

TR&D Project 4. The Imaging Stage: Multiscale Spatiotemporal Modeling of Macromolecular Systems in Cellular NeighborhoodsP41GM109824 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2014 to 2023
$18.8M
National Resource for Mass Spectrom of Biological MacromoleculesP41GM103314 · NIGMS · ROCKEFELLER UNIVERSITY · PI CHAIT, BRIAN T · 2012 to 2017
$9.9M
Chemical Biology of Cell Division - Revision - 2R35GM130234 · NIGMS · ROCKEFELLER UNIVERSITY · PI TARUN M. KAPOOR · 2019 to 2026
$6.0M
Probing Symmetry Breaking in Epigenetic Inheritance: From Single Molecules to Systems BiologyDP2HG010510 · NHGRI · ROCKEFELLER UNIVERSITY · PI LIU, SHIXIN · 2018 to 2018
$2.5M
A biophysical approach to elucidating the molecular mechanisms of mitotic inhibitor targetsK00CA223018 · NCI · ROCKEFELLER UNIVERSITY · PI MICKOLAJCZYK, KEITH JOSEPH · 2018 to 2021
$379k
NCI NIH HHS K00 CA223018NHGRI NIH HHS DP2 HG010510NIGMS NIH HHS P41 GM103314NIGMS NIH HHS P41 GM109824NIGMS NIH HHS R35 GM130234
6 · The paper itself

Abstract

Catch bonds are a form of mechanoregulation wherein protein-ligand interactions are strengthened by the application of dissociative tension. Currently, the best-characterized examples of catch bonds are between single protein-ligand pairs. The essential AAA (ATPase associated with diverse cellular activities) mechanoenzyme Mdn1 drives at least two separate steps in ribosome biogenesis, using its MIDAS domain to extract the ubiquitin-like (UBL) domain-containing proteins Rsa4 and Ytm1 from ribosomal precursors. However, it must subsequently release these assembly factors to reinitiate the enzymatic cycle. The mechanism underlying the switching of the MIDAS-UBL interaction between strongly and weakly bound states is unknown. Here, we use optical tweezers to investigate the force dependence of MIDAS-UBL binding. Parallel experiments with Rsa4 and Ytm1 show that forces up to ~4 pN, matching the magnitude of force produced by AAA proteins similar to Mdn1, enhance the MIDAS domain binding lifetime up to 10-fold, and higher forces accelerate dissociation. Together, our studies indicate that Mdn1's MIDAS domain can form catch bonds with more than one UBL substrate, and provide insights into how mechanoregulation may contribute to the Mdn1 enzymatic cycle during ribosome biogenesis.

Indexed as

ATPases Associated with Diverse Cellular ActivitiesBinding SitesLigandsOptical TweezersOrganelle BiogenesisProtein BindingProtein DomainsRibosomesRibosome Subunits, Large, EukaryoticSaccharomyces cerevisiae ProteinsSchizosaccharomyces pombe ProteinsSingle Molecule ImagingUbiquitinATPases Associated with Diverse Cellular ActivitiesLigandsMDN1 protein, S cerevisiaeMdn1 protein, S pombeSaccharomyces cerevisiae ProteinsSchizosaccharomyces pombe ProteinsUbiquitincatch bondmolecular biophysicsnoneoptical tweezersribosome biogenesisstructural biology

Identifiers

PMID35147499
PMCPMC8837202
OpenAlexW4220945838

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.