Evidence map›Paper›PMID 35146455›Full record

ArticleHGG advances2022

Prediction of breast cancer risk based on flow variant analysis of circulating peripheral blood mononuclear cells.

Johnny Loke, Ishraq Alim, Sarah Yam, Susan Klugman, Li C Xia, Dorota Gruber, David Tegay, Andrea LaBella, Kenan Onel, Harry Ostrer

Open access · goldAbstract read
In one paragraph

Article in HGG advances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 53% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Cancer Risk C (CR-C), a functional genomics test is a sensitive and rapid test for germline mismatch repair deficiency.Genetics in medicine : official journal of the American College of Medical Genetics · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Johnny LokeDepartment of Pathology, Albert Einstein College of Medicine, Bronx, NY 10416, USA.
Ishraq AlimDepartment of Pathology, Albert Einstein College of Medicine, Bronx, NY 10416, USA.
Sarah YamMorgan and Mendel Genomics, Bronx, NY 10461, USA.
Susan KlugmanDepartment of Pathology, Albert Einstein College of Medicine, Bronx, NY 10416, USA.
Li C XiaDepartment of Pathology, Albert Einstein College of Medicine, Bronx, NY 10416, USA.
Dorota GruberDepartment of Pediatrics, Cohen's Children Medical Center, Northwell Health, New Hyde Park, NY 11040, USA.
David TegayDepartment of Pediatrics, Cohen's Children Medical Center, Northwell Health, New Hyde Park, NY 11040, USA.
Andrea LaBellaDepartment of Pediatrics, Cohen's Children Medical Center, Northwell Health, New Hyde Park, NY 11040, USA.
Kenan OnelDepartment of Human Genetics and Genomics, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Harry OstrerDepartment of Pathology, Albert Einstein College of Medicine, Bronx, NY 10416, USA.
Albert Einstein College of Medicine · USNorthwell Health · USIcahn School of Medicine at Mount Sinai · US

Funding

Robust Predictor of Breast Cancer RiskR42CA217383 · NCI · MORGAN AND MENDEL GENOMICS, INC. · PI OSTRER, HARRY · 2020 to 2022
$2.2M
NCI NIH HHS R42 CA217383
6 · The paper itself

Abstract

Identifying women at high risk for developing breast cancer is potentially lifesaving. Patients with pathogenic genetic variants can embark on a program of surveillance for early detection, chemoprevention, and/or prophylactic surgery. Newly diagnosed cancer patients can also use the results of gene panel sequencing to make decisions about surgery; therefore, rapid turnaround time for results is critical. Cancer Risk B (CR-B), a test that uses flow variant assays to assess the effects of variants in the DNA double-strand break repair, was applied to two groups of subjects who underwent coincidental gene panel testing, thereby allowing an assessment of sensitivity, specificity and accuracy, and utility for annotating variants of uncertain significance (VUS). The test was compared in matched peripheral blood mononuclear cells (PBMCs) and lymphoblastoid cells (LCLs) and tested for rescue in LCLs with gene transfer. The CR-B phenotype demonstrated a bimodal distribution: CR-B

Indexed as

breast cancerfunctional genomicsgenetic testinghigh riskpanel sequencingvariants of uncertain significance

Identifiers

PMID35146455
PMCPMC8801379
OpenAlexW4205107913

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.