Evidence map›Paper›PMID 35145123›Full record

ArticleNature communications2022

GLI transcriptional repression is inert prior to Hedgehog pathway activation.

Rachel K Lex, Weiqiang Zhou, Zhicheng Ji, Kristin N Falkenstein, Kaleigh E Schuler, Kathryn E Windsor, Joseph D Kim, Hongkai Ji, Steven A Vokes

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 30 citations in OpenAlex.

  1. Review
  2. Article
  3. A dual role for GLI3 signaling in neural crest development.Development (Cambridge, England) · 2026
    Article
  4. The Ubiquitin-Proteasome System in Brain Disorders: Pathogenic Pathways, Post-Translational Tweaks, and Therapeutic Frontiers.Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology · 2025
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Current Status of Hedgehog Signaling Inhibitors.Current topics in medicinal chemistry · 2024
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Timing is everything: Transcriptional repression is not the default mode for regulating Hedgehog signaling.BioEssays : news and reviews in molecular, cellular and developmental biology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Rachel K LexDepartment of Molecular Biosciences, University of Texas at Austin, Austin, TX, USA.
Weiqiang ZhouDepartment of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA.
Zhicheng JiDepartment of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA.
Kristin N FalkensteinDepartment of Molecular Biosciences, University of Texas at Austin, Austin, TX, USA.
Kaleigh E SchulerDepartment of Molecular Biosciences, University of Texas at Austin, Austin, TX, USA.ORCID http://orcid.org/0000-0002-6618-7635
Kathryn E WindsorDepartment of Molecular Biosciences, University of Texas at Austin, Austin, TX, USA.
Joseph D KimDepartment of Molecular Biosciences, University of Texas at Austin, Austin, TX, USA.ORCID http://orcid.org/0000-0002-7116-4454
Hongkai JiDepartment of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA.ORCID http://orcid.org/0000-0002-6480-0141
Steven A VokesDepartment of Molecular Biosciences, University of Texas at Austin, Austin, TX, USA. svokes@austin.utexas.edu.ORCID http://orcid.org/0000-0002-1724-0102
The University of Texas at Austin · USJohns Hopkins University · US

Funding

Cis-regulatory circuitry underlying Hedgehog mediated limb developmentR01HD073151 · NICHD · UNIVERSITY OF TEXAS AT AUSTIN · PI Steven Alexander Vokes · 2012 to 2026
$5.1M
Big Data Methods for Decoding Gene RegulationR01HG009518 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI JI, HONGKAI · 2018 to 2021
$1.7M
Defining the epigenetic mechanisms underlying GLI-mediated transcriptional repressionF31DE027597 · NIDCR · UNIVERSITY OF TEXAS AT AUSTIN · PI LEX, RACHEL K · 2017 to 2020
$122k
NHGRI NIH HHS R01 HG009518NICHD NIH HHS R01 HD073151NIDCR NIH HHS F31 DE027597
6 · The paper itself

Abstract

The Hedgehog (HH) pathway regulates a spectrum of developmental processes through the transcriptional mediation of GLI proteins. GLI repressors control tissue patterning by preventing sub-threshold activation of HH target genes, presumably even before HH induction, while lack of GLI repression activates most targets. Despite GLI repression being central to HH regulation, it is unknown when it first becomes established in HH-responsive tissues. Here, we investigate whether GLI3 prevents precocious gene expression during limb development. Contrary to current dogma, we find that GLI3 is inert prior to HH signaling. While GLI3 binds to most targets, loss of Gli3 does not increase target gene expression, enhancer acetylation or accessibility, as it does post-HH signaling. Furthermore, GLI repression is established independently of HH signaling, but after its onset. Collectively, these surprising results challenge current GLI pre-patterning models and demonstrate that GLI repression is not a default state for the HH pathway.

Indexed as

AnimalsGene ExpressionGene Expression Regulation, DevelopmentalHedgehog ProteinsMiceSignal TransductionTranscription FactorsTranscriptomeZinc Finger Protein GLI1Gli1 protein, mouseHedgehog ProteinsTranscription FactorsZinc Finger Protein GLI1

Identifiers

PMID35145123
PMCPMC8831537
OpenAlexW4220920197

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.