Evidence map›Paper›PMID 35145092›Full record

ArticleNature communications2022

Structures of highly flexible intracellular domain of human α7 nicotinic acetylcholine receptor.

Vasyl Bondarenko, Marta M Wells, Qiang Chen, Tommy S Tillman, Kevin Singewald, Matthew J Lawless, Joel Caporoso, Nicole Brandon, Jonathan A Coleman, Sunil Saxena and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 43 citations in OpenAlex.

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  19. 5-HTACS chemical neuroscience · 2022
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 2 countries.

Vasyl Bondarenko *Depatment of Anesthesiology and Perioperative Medicine, University of Pittsburgh, Pittsburgh, PA, 15260, USA.ORCID http://orcid.org/0000-0002-4895-3447
Marta M Wells *Depatment of Anesthesiology and Perioperative Medicine, University of Pittsburgh, Pittsburgh, PA, 15260, USA.ORCID http://orcid.org/0000-0001-6800-134X
Qiang ChenDepatment of Anesthesiology and Perioperative Medicine, University of Pittsburgh, Pittsburgh, PA, 15260, USA.ORCID http://orcid.org/0000-0002-6524-9849
Tommy S TillmanDepatment of Anesthesiology and Perioperative Medicine, University of Pittsburgh, Pittsburgh, PA, 15260, USA.
Kevin SingewaldDepartment of Chemistry, University of Pittsburgh, Pittsburgh, PA, 15260, USA.ORCID http://orcid.org/0000-0002-3041-5085
Matthew J LawlessDepartment of Chemistry, University of Pittsburgh, Pittsburgh, PA, 15260, USA.
Joel CaporosoDepatment of Anesthesiology and Perioperative Medicine, University of Pittsburgh, Pittsburgh, PA, 15260, USA.
Nicole BrandonDepatment of Anesthesiology and Perioperative Medicine, University of Pittsburgh, Pittsburgh, PA, 15260, USA.ORCID http://orcid.org/0000-0002-3015-7741
Jonathan A ColemanDepartment of Structural Biology, University of Pittsburgh, Pittsburgh, PA, 15260, USA.ORCID http://orcid.org/0000-0003-0001-6195
Sunil SaxenaDepartment of Chemistry, University of Pittsburgh, Pittsburgh, PA, 15260, USA.ORCID http://orcid.org/0000-0001-9098-6114
Erik LindahlDepartment of Biochemistry and Biophysics, Science for Life Laboratory, Stockholm University, Solna, Sweden.
Yan XuDepatment of Anesthesiology and Perioperative Medicine, University of Pittsburgh, Pittsburgh, PA, 15260, USA.ORCID http://orcid.org/0000-0003-2773-8024
Pei TangDepatment of Anesthesiology and Perioperative Medicine, University of Pittsburgh, Pittsburgh, PA, 15260, USA. ptang@pitt.edu.ORCID http://orcid.org/0000-0002-2869-2737
University of Pittsburgh · USStockholm University · SE

Funding

VECTOR CORE FACILITYP30CA047904 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CHRISTOPHER J. BAKKENIST · 1988 to 2026
$158.0M
Research Training in Anesthesiology and Pain MedicineT32GM075770 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI YAN XU · 2007 to 2026
$4.8M
Integrated Interdisciplinary, inter-university PhD Program Computational Biology (T32)T32EB009403 · NIBIB · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BAHAR, IVET, BAR-JOSEPH, ZIV · 2009 to 2023
$4.4M
Alpha7 Nicotinic Receptor: Structures and Coupling with Intracellular ProteinsR01DA046939 · NIDA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI TANG, PEI · 2018 to 2022
$2.7M
NCI NIH HHS P30 CA047904NIBIB NIH HHS T32 EB009403NIDA NIH HHS R01 DA046939NIGMS NIH HHS T32 GM075770
6 · The paper itself

Abstract

The intracellular domain (ICD) of Cys-loop receptors mediates diverse functions. To date, no structure of a full-length ICD is available due to challenges stemming from its dynamic nature. Here, combining nuclear magnetic resonance (NMR) and electron spin resonance experiments with Rosetta computations, we determine full-length ICD structures of the human α7 nicotinic acetylcholine receptor in a resting state. We show that ~57% of the ICD residues are in highly flexible regions, primarily in a large loop (loop L) with the most mobile segment spanning ~50 Å from the central channel axis. Loop L is anchored onto the MA helix and virtually forms two smaller loops, thereby increasing its stability. Previously known motifs for cytoplasmic binding, regulation, and signaling are found in both the helices and disordered flexible regions, supporting the essential role of the ICD conformational plasticity in orchestrating a broad range of biological processes.

Indexed as

alpha7 Nicotinic Acetylcholine ReceptorAnimalsBinding SitesCryoelectron MicroscopyFemaleHumansModels, MolecularProtein BindingProtein ConformationReceptors, NicotinicXenopusalpha7 Nicotinic Acetylcholine ReceptorReceptors, Nicotinic

Identifiers

PMID35145092
PMCPMC8831596
OpenAlexW4211238993

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.