Evidence map›Paper›PMID 35145086›Full record

ArticleNature communications2022

In vivo CRISPR screens reveal a HIF-1α-mTOR-network regulates T follicular helper versus Th1 cells.

Bonnie Huang, James D Phelan, Silvia Preite, Julio Gomez-Rodriguez, Kristoffer H Johansen, Hirofumi Shibata, Arthur L Shaffer, Qin Xu, Brendan Jeffrey, Martha Kirby and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
3.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 41 citations in OpenAlex.

  1. Targeting T follicular helper cells for lifelong health.Nature reviews. Drug discovery · 2026
    Review
  2. Article
  3. [Ubiquitination-mediated regulation of T cell homeostasis and autoimmune diseases].Zhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2026
    Review
  4. Article
  5. HIF-1αImmunity · 2026
    Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Roles of endothelial cells during infection.Current opinion in immunology · 2025
    Review
  11. Review
  12. Article
  13. Review
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Oligoclonal CD4Communications biology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 1 institution in 1 country.

Bonnie HuangNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, 20892, USA. bonniehuangnih@gmail.com.ORCID 0000-0001-5931-6075
James D PhelanNational Cancer Institute, National Institutes of Health, Bethesda, MD, 20892, USA.
Silvia PreiteNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, 20892, USA.
Julio Gomez-RodriguezNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, 20892, USA.
Kristoffer H JohansenNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, 20892, USA.ORCID 0000-0002-7711-9451
Hirofumi ShibataNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, 20892, USA.
Arthur L ShafferNational Cancer Institute, National Institutes of Health, Bethesda, MD, 20892, USA.
Qin XuNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, 20892, USA.ORCID 0000-0003-1812-3108
Brendan JeffreyNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, 20892, USA.
Martha KirbyNational Human Genome Research Institute, National Institutes of Health, Bethesda, MD, 20892, USA.ORCID 0000-0001-7157-7964
Stacie AndersonNational Human Genome Research Institute, National Institutes of Health, Bethesda, MD, 20892, USA.
Yandan YangNational Cancer Institute, National Institutes of Health, Bethesda, MD, 20892, USA.
Selamawit GossaNational Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD, 20892, USA.
Dorian B McGavernNational Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD, 20892, USA.ORCID 0000-0001-9568-545X
Louis M StaudtNational Cancer Institute, National Institutes of Health, Bethesda, MD, 20892, USA.
Pamela L SchwartzbergNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, 20892, USA. pams@nih.gov.ORCID 0000-0001-6318-9187
National Institutes of Health · US

Funding

Pathogenesis of viral meningitisZIANS003112 · NINDS · NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE · PI MCGAVERN, DORIAN · 2009 to 2025
$33.6M
RNA interference-based screens for molecular targets in cancerZIABC011007 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI STAUDT, LOUIS · 2009 to 2025
$21.0M
Genetic and Biochemical Approaches to Tyrosine Kinase and Lymphocyte SignalingZIAAI001240 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI SCHWARTZBERG, PAMELA · 2019 to 2025
$18.8M
NHGRI/DIR Flow Cytometry CoreZICHG200350 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI ANDERSON, STACIE · 2010 to 2025
$16.3M
6 · The paper itself

Abstract

T follicular helper (Tfh) cells provide signals to initiate and maintain the germinal center (GC) reaction and are crucial for the generation of robust, long-lived antibody responses, but how the GC microenvironment affects Tfh cells is not well understood. Here we develop an in vivo T cell-intrinsic CRISPR-knockout screen to evaluate Tfh and Th1 cells in an acute viral infection model to identify regulators of Tfh cells in their physiological setting. Using a screen of druggable-targets, alongside genetic, transcriptomic and cellular analyses, we identify a function of HIF-1α in suppressing mTORC1-mediated and Myc-related pathways, and provide evidence that VHL-mediated degradation of HIF-1α is required for Tfh development; an expanded in vivo CRISPR screen reveals multiple components of these pathways that regulate Tfh versus Th1 cells, including signaling molecules, cell-cycle regulators, nutrient transporters, metabolic enzymes and autophagy mediators. Collectively, our data serve as a resource for studying Tfh versus Th1 decisions, and implicate the VHL-HIF-1α axis in fine-tuning Tfh generation.

Indexed as

Clustered Regularly Interspaced Short Palindromic RepeatsAnimalsAntibody FormationCell DifferentiationGene ExpressionGene Knockout TechniquesGerminal CenterGlycolysisHypoxia-Inducible Factor 1, alpha SubunitImmunity, HumoralMechanistic Target of Rapamycin Complex 1MiceTh1 CellsT-Lymphocytes, Helper-InducerTOR Serine-Threonine KinasesVirus DiseasesHif1a protein, mouseHypoxia-Inducible Factor 1, alpha SubunitMechanistic Target of Rapamycin Complex 1mTOR protein, mouseTOR Serine-Threonine Kinases

Identifiers

PMID35145086
PMCPMC8831505
OpenAlexW4210993968

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.