Evidence map›Paper›PMID 35145077›Full record

ArticleNature communications2022

Deciphering spatial genomic heterogeneity at a single cell resolution in multiple myeloma.

Maximilian Merz, Almuth Maria Anni Merz, Jie Wang, Lei Wei, Qiang Hu, Nicholas Hutson, Cherie Rondeau, Kimberly Celotto, Ahmed Belal, Ronald Alberico and 14 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
10.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 66 citations in OpenAlex.

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  19. Identification of Therapy-Induced Clonal Evolution and Resistance Pathways in Minimal Residual Clones in Multiple Myeloma through Single-Cell Sequencing.Clinical cancer research : an official journal of the American Association for Cancer Research · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 2 institutions in 2 countries.

Maximilian Merz *Department of Medicine, Roswell Park Comprehensive Cancer Center (Roswell Park), Buffalo, NY, USA. maximilian.merz@medizin.uni-leipzig.de.ORCID http://orcid.org/0000-0002-2805-5973
Almuth Maria Anni Merz *Department of Medicine, Roswell Park Comprehensive Cancer Center (Roswell Park), Buffalo, NY, USA.
Jie Wang *Department of Biostatistics and Bioinformatics, Roswell Park, Buffalo, USA.
Lei Wei *Department of Biostatistics and Bioinformatics, Roswell Park, Buffalo, USA.ORCID http://orcid.org/0000-0002-1881-8666
Qiang HuDepartment of Biostatistics and Bioinformatics, Roswell Park, Buffalo, USA.ORCID http://orcid.org/0000-0002-4090-5539
Nicholas HutsonDepartment of Biostatistics and Bioinformatics, Roswell Park, Buffalo, USA.
Cherie RondeauDepartment of Medicine, Roswell Park Comprehensive Cancer Center (Roswell Park), Buffalo, NY, USA.
Kimberly CelottoDepartment of Medicine, Roswell Park Comprehensive Cancer Center (Roswell Park), Buffalo, NY, USA.
Ahmed BelalDepartment of Diagnostic Radiology, Roswell Park, Buffalo, USA.
Ronald AlbericoDepartment of Diagnostic Radiology, Roswell Park, Buffalo, USA.
AnneMarie W BlockClinical Cytogenetics Laboratory, Department of Pathology and Laboratory Medicine, Roswell Park, Buffalo, USA.
Hemn MohammadpourDepartment of Immunology, Roswell Park, Buffalo, USA.
Paul K WallaceFlow and Image Cytometry, Department of Pathology and Laboratory Medicine, Roswell Park, Buffalo, USA.
Joseph TarioFlow and Image Cytometry, Department of Pathology and Laboratory Medicine, Roswell Park, Buffalo, USA.
Jesse LuceGenomics Shared Resources, Roswell Park, Buffalo, USA.
Sean T GlennGenomics Shared Resources, Roswell Park, Buffalo, USA.
Prashant SinghGenomics Shared Resources, Roswell Park, Buffalo, USA.
Megan M HerrTransplant and Cellular Therapy Program, Department of Medicine, Roswell Park, Buffalo, USA.ORCID http://orcid.org/0000-0001-5768-9396
Theresa HahnTransplant and Cellular Therapy Program, Department of Medicine, Roswell Park, Buffalo, USA.ORCID http://orcid.org/0000-0002-3835-8855
Mehmet SamurDepartment of Data Sciences, Dana Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0002-9978-5682
Nikhil MunshiDepartment of Medical Oncology, Dana Farber Cancer Institute, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-7344-9795
Song LiuDepartment of Biostatistics and Bioinformatics, Roswell Park, Buffalo, USA.
Philip L McCarthyTransplant and Cellular Therapy Program, Department of Medicine, Roswell Park, Buffalo, USA.
Jens HillengassDepartment of Medicine, Roswell Park Comprehensive Cancer Center (Roswell Park), Buffalo, NY, USA. jens.hillengass@roswellpark.org.ORCID http://orcid.org/0000-0002-1778-0010
Roswell Park Comprehensive Cancer Center · USHarvard University · US

Funding

Two-Spirit Films in Indigenous Cancer HealthP30CA016056 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI CANDACE S JOHNSON · 1985 to 2026
$116.6M
Trageting the Multiple Myeloma EpigenomeP50CA100707 · NCI · DANA-FARBER CANCER INSTITUTE · PI ANDERSON, KENNETH C., MUNSHI, NIKHIL C. · 2003 to 2023
$45.0M
Targeting Genomic Instability and Evolution in MyelomaP01CA155258 · NCI · DANA-FARBER CANCER INST · PI Nikhil C. Munshi · 2011 to 2026
$32.5M
Overcoming stress driven suppression of the anti-tumor immune response in cancer - understanding the MDSC piece of the puzzleF32CA239356 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI MOHAMMADPOUR, HEMN · 2020 to 2021
$80k
BLRD VA I01 BX001584NCI NIH HHS F32 CA239356NCI NIH HHS P01 CA155258NCI NIH HHS P30 CA016056NCI NIH HHS P50 CA100707
6 · The paper itself

Abstract

Osteolytic lesions (OL) characterize symptomatic multiple myeloma. The mechanisms of how malignant plasma cells (PC) cause OL in one region while others show no signs of bone destruction despite subtotal infiltration remain unknown. We report on a single-cell RNA sequencing (scRNA-seq) study of PC obtained prospectively from random bone marrow aspirates (BM) and paired imaging-guided biopsies of OL. We analyze 148,630 PC from 24 different locations in 10 patients and observe vast inter- and intra-patient heterogeneity based on scRNA-seq analyses. Beyond the limited evidence for spatial heterogeneity from whole-exome sequencing, we find an additional layer of complexity by integrated analysis of anchored scRNA-seq datasets from the BM and OL. PC from OL are characterized by differentially expressed genes compared to PC from BM, including upregulation of genes associated with myeloma bone disease like DKK1, HGF and TIMP-1 as well as recurrent downregulation of JUN/FOS, DUSP1 and HBB. Assessment of PC from longitudinally collected samples reveals transcriptional changes after induction therapy. Our study contributes to the understanding of destructive myeloma bone disease.

Indexed as

Genetic HeterogeneityGenomicsBone DiseasesBone MarrowCluster AnalysisExome SequencingGene Expression Regulation, NeoplasticHumansMultiple MyelomaPlasma Cells

Identifiers

PMID35145077
PMCPMC8831582
OpenAlexW4220962156

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.