Evidence map›Paper›PMID 35145068›Full record

ArticleNature communications2022

Engineering and exploiting synthetic allostery of NanoLuc luciferase.

Zhong Guo, Rinky D Parakra, Ying Xiong, Wayne A Johnston, Patricia Walden, Selvakumar Edwardraja, Shayli Varasteh Moradi, Jacobus P J Ungerer, Hui-Wang Ai, Jonathan J Phillips and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
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  6. Circular permutation at azurin's active site slows down its folding.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2023
    Article
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  9. Genetically encoded fluorescent sensors for metals in biology.Current opinion in chemical biology · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 3 countries.

Zhong GuoARC Centre of Excellence in Synthetic Biology, Sydney, Australia.
Rinky D ParakraLiving Systems Institute, Department of Biosciences, University of Exeter, Exeter, EX4 4QD, UK.
Ying XiongCenter for Membrane and Cell Physiology, Department of Molecular Physiology and Biological Physics, Department of Chemistry, University of Virginia, 1340 Jefferson Park Avenue, Charlottesville, VA, 22908, USA.
Wayne A JohnstonARC Centre of Excellence in Synthetic Biology, Sydney, Australia.
Patricia WaldenARC Centre of Excellence in Synthetic Biology, Sydney, Australia.
Selvakumar EdwardrajaAustralian Institute for Bioengineering and Nanotechnology, The University of Queensland, Brisbane, QLD, 4072, Australia.ORCID http://orcid.org/0000-0002-4723-5152
Shayli Varasteh MoradiARC Centre of Excellence in Synthetic Biology, Sydney, Australia.
Jacobus P J UngererDepartment of Chemical Pathology, Pathology Queensland, Brisbane, QLD, 4001, Australia.
Hui-Wang AiCenter for Membrane and Cell Physiology, Department of Molecular Physiology and Biological Physics, Department of Chemistry, University of Virginia, 1340 Jefferson Park Avenue, Charlottesville, VA, 22908, USA.ORCID http://orcid.org/0000-0002-5664-3270
Jonathan J PhillipsLiving Systems Institute, Department of Biosciences, University of Exeter, Exeter, EX4 4QD, UK. jj.phillips@exeter.ac.uk.
Kirill AlexandrovARC Centre of Excellence in Synthetic Biology, Sydney, Australia. kirill.alexandrov@qut.edu.au.ORCID http://orcid.org/0000-0002-0957-6511
Queensland University of Technology · AUUniversity of Virginia · USQueensland Health · AUThe University of Queensland · AUTuring Institute · GBUniversity of Exeter · GB

Funding

Red and Far-Red Fluorescent Biosensors for Compartmentalized Redox SignalingR01GM129291 · NIGMS · UNIVERSITY OF VIRGINIA · PI AI, HUIWANG · 2018 to 2021
$2.1M
A Fluorescent Toolkit for Imaging Reactive Oxygen Species (ROS)R01GM118675 · NIGMS · UNIVERSITY OF VIRGINIA · PI AI, HUIWANG · 2016 to 2019
$1.4M
Medical Research Council MR/T02223X/1NIGMS NIH HHS R01 GM118675NIGMS NIH HHS R01 GM129291
6 · The paper itself

Abstract

Allostery enables proteins to interconvert different biochemical signals and form complex metabolic and signaling networks. We hypothesize that circular permutation of proteins increases the probability of functional coupling of new N- and C- termini with the protein's active center through increased local structural disorder. To test this we construct a synthetically allosteric version of circular permutated NanoLuc luciferase that can be activated through ligand-induced intramolecular non-covalent cyclisation. This switch module is tolerant of the structure of binding domains and their ligands, and can be used to create biosensors of proteins and small molecules. The developed biosensors covers a range of emission wavelengths and displays sensitivity as low as 50pM and dynamic range as high as 16-fold and could quantify their cognate ligand in human fluids. We apply hydrogen exchange kinetic mass spectroscopy to analyze time resolved structural changes in the developed biosensors and observe ligand-mediated folding of newly created termini.

Indexed as

Allosteric RegulationMetabolic EngineeringGene Expression RegulationHumansLigandsLuciferasesModels, MolecularLigandsLuciferasesnanoluc

Identifiers

PMID35145068
PMCPMC8831504
OpenAlexW4211040588

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.