Evidence map›Paper›PMID 35144109›Full record

ArticleVirology2022

Immune escape mutations selected by neutralizing antibodies in natural HIV-1 infection can alter coreceptor usage repertoire of the transmitted/founder virus.

Manukumar Honnayakanahalli Marichannegowda, Hongshuo Song

Open access · greenAbstract read
In one paragraph

Article in Virology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
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  6. Review
  7. A New HIV-1 KMicrobiology spectrum · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 2 countries.

Manukumar Honnayakanahalli MarichannegowdaInstitute of Human Virology, University of Maryland School of Medicine, Baltimore, MD, USA.
Hongshuo SongInstitute of Human Virology, University of Maryland School of Medicine, Baltimore, MD, USA. Electronic address: hongshuo.song@ihv.umaryland.edu.
University of Maryland, Baltimore · US

Funding

Genetic imprints of therapeutic Ad26/MVA mosaic vaccine in rebound HIV-1 genome from acutely treated individualsR21AI147893 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI SONG, HONGSHUO · 2019 to 2020
$441k
NIAID NIH HHS R21 AI147893
6 · The paper itself

Abstract

The ability of HIV-1 to evade neutralizing antibodies (NAbs) in vivo is well demonstrated, but the impact of NAb escape mutations on HIV-1 phenotype other than immune escape itself has rarely been studied. Here, we show that immune escape mutations selected by V3-glycan specific NAbs in vivo can alter coreceptor usage repertoire of the transmitted/founder (T/F) HIV-1. In a participant developed V3-glycan NAb response, naturally selected escape mutations at the V3 N301 and N332 glycan sites abrogated CCR8 usage while conferred APJ usage on the cognate T/F strain. Mutations at the N301 glycan also impaired CCR3 usage and partially compromised the efficiency in using CCR5, which could be fully restored by a single escape mutation at the N332 glycan site. Our study demonstrates the link between NAb escape and coreceptor usage alteration in natural HIV-1 infection and indicates that NAb response could drive virus entry tropism evolution in vivo.

Indexed as

Immune EvasionMutationAmino Acid SequenceAntibodies, NeutralizingHIV-1HIV AntibodiesHIV Envelope Protein gp120HIV InfectionsHost-Pathogen InteractionsHumansAntibodies, NeutralizingHIV AntibodiesHIV Envelope Protein gp120Coreceptor usageHIV-1Immune escapeNeutralizing antibody

Identifiers

PMID35144109
PMCPMC9305671
OpenAlexW4221088761

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.