Evidence map›Paper›PMID 35139120›Full record

ArticlePloS one2022

Predicted 3D model of the M protein of Porcine Epidemic Diarrhea Virus and analysis of its immunogenic potential.

Alan Rodríguez-Enríquez, Irma Herrera-Camacho, Lourdes Millán-Pérez-Peña, Julio Reyes-Leyva, Gerardo Santos-López, José Francisco Rivera-Benítez, Nora Hilda Rosas-Murrieta

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  4. Surface displayed porcine epidemic diarrhea virus membrane epitopes onJournal of animal science and technology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Alan Rodríguez-EnríquezLaboratory of Biochemistry and Molecular Biology, Chemistry Center, Institute of Science., Benemérita Universidad Autónoma de Puebla, Puebla, México.ORCID 0000-0003-0331-6708
Irma Herrera-CamachoLaboratory of Biochemistry and Molecular Biology, Chemistry Center, Institute of Science., Benemérita Universidad Autónoma de Puebla, Puebla, México.
Lourdes Millán-Pérez-PeñaLaboratory of Biochemistry and Molecular Biology, Chemistry Center, Institute of Science., Benemérita Universidad Autónoma de Puebla, Puebla, México.
Julio Reyes-LeyvaMolecular Biology and Virology Laboratory, Centro de Investigación Biomédica de Oriente, Instituto Mexicano del Seguro Social (IMSS), Metepec, México, México.
Gerardo Santos-LópezMolecular Biology and Virology Laboratory, Centro de Investigación Biomédica de Oriente, Instituto Mexicano del Seguro Social (IMSS), Metepec, México, México.
José Francisco Rivera-BenítezCentro Nacional de Investigación Disciplinaria en Salud Animal e Inocuidad, Instituto Nacional de Investigaciones Forestales, Agrícolas y Pecuarias, Ciudad de México, México.
Nora Hilda Rosas-MurrietaLaboratory of Biochemistry and Molecular Biology, Chemistry Center, Institute of Science., Benemérita Universidad Autónoma de Puebla, Puebla, México.ORCID 0000-0002-4605-670X
Benemérita Universidad Autónoma de Puebla · MXMexican Social Security Institute · MXInstituto Nacional de Investigaciones Forestales Agrícolas y Pecuarias · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The membrane protein M of the Porcine Epidemic Diarrhea Virus (PEDV) is the most abundant component of the viral envelope. The M protein plays a central role in the morphogenesis and assembly of the virus through protein interactions of the M-M, M-Spike (S) and M-nucleocapsid (N) type. The M protein is known to induce protective antibodies in pigs and to participate in the antagonistic response of the cellular antiviral system coordinated by the type I and type III interferon pathways. The 3D structure of the PEDV M protein is still unknown. The present work exposes a predicted 3D model of the M protein generated using the Robetta protocol. The M protein model is organized into a transmembrane and a globular region. The obtained 3D model of the PEDV M protein was compared with 3D models of the SARS-CoV-2 M protein created using neural networks and with initial machine learning-based models created using trRosetta. The 3D model of the present study predicted four linear B-cell epitopes (RSVNASSGTG and KHGDYSAVSNPSALT peptides are noteworthy), six discontinuous B-cell epitopes, forty weak binding and fourteen strong binding T-cell epitopes in the CV777 M protein. A high degree of conservation of the epitopes predicted in the PEDV M protein was observed among different PEDV strains isolated in different countries. The data suggest that the M protein could be a potential candidate for the development of new treatments or strategies that activate protective cellular mechanisms against viral diseases.

Indexed as

Amino Acid SequenceAnimalsCoronavirus InfectionsCoronavirus M ProteinsEpitopes, B-LymphocyteEpitopes, T-LymphocyteModels, MolecularPorcine epidemic diarrhea virusProtein ConformationSwineSwine DiseasesCoronavirus M ProteinsEpitopes, B-LymphocyteEpitopes, T-Lymphocyte

Identifiers

PMID35139120
PMCPMC8827446
OpenAlexW4210870874

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.