Evidence map›Paper›PMID 35138928›Full record

SynthesisApplied and environmental microbiology2022

A Meta-Analysis Approach to Defining the Culturable Core of Plant Endophytic Bacterial Communities.

Valentina Riva, Francesca Mapelli, Agnese Bagnasco, Alessio Mengoni, Sara Borin

Abstract readMeta-AnalysisReview
In one paragraph

Synthesis in Applied and environmental microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. MAGs-centric crack: how long will, spore-positiveFrontiers in microbiology · 2024
    Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Valentina RivaDepartment of Food, Environmental and Nutritional Sciences (DeFENS), University of Milangrid.4708.b, Milan, Italy.
Francesca MapelliDepartment of Food, Environmental and Nutritional Sciences (DeFENS), University of Milangrid.4708.b, Milan, Italy.ORCID 0000-0002-2928-6538
Agnese BagnascoDepartment of Food, Environmental and Nutritional Sciences (DeFENS), University of Milangrid.4708.b, Milan, Italy.
Alessio MengoniDepartment of Biology, University of Florence, Florence, Italy.ORCID 0000-0002-1265-8251
Sara BorinDepartment of Food, Environmental and Nutritional Sciences (DeFENS), University of Milangrid.4708.b, Milan, Italy.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Endophytic bacteria are key members of the plant microbiome, which phylogenetic diversity has been widely described through next-generation sequencing technologies in the last decades. On the other side, a synopsis of culturable plant endophytic bacteria is still lacking in the literature. However, culturability is necessary for biotechnology innovations related to sustainable agriculture, such as biofertilizer and biostimulant agents' development. In this review, 148 scientific papers were analyzed to establish a large data set of cultured endophytic bacteria, reported at the genus level, inhabiting different compartments of wild and farmed plants, sampled around the world from different soil types and isolated using various growth media. To the best of our knowledge, this work provides the first overview of the current repertoire of cultured plant endophytic bacteria. Results indicate the presence of a recurrent set of culturable bacterial genera regardless of factors known to influence the plant bacterial community composition and the growth media used for the bacterial isolation. Moreover, a wide variety of bacterial genera that are currently rarely isolated from the plant endosphere was identified, demonstrating that culturomics can catch previously uncultured bacteria from the plant microbiome, widening the panorama of strains exploitable to support plant holobiont health and production.

Indexed as

BacteriaMicrobiotaEndophytesHigh-Throughput Nucleotide SequencingPhylogenyPlant RootsRNA, Ribosomal, 16SRNA, Ribosomal, 16Sculturomicsendophytesplant microbiome

Identifiers

PMID35138928
PMCPMC8939329

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.