Evidence map›Paper›PMID 35137065›Full record

ArticleHuman molecular genetics2022

Mechanistic convergence across initiation sites for RAN translation in fragile X associated tremor ataxia syndrome.

Yuan Zhang, M Rebecca Glineburg, Venkatesha Basrur, Kevin Conlon, Shannon E Wright, Amy Krans, Deborah A Hall, Peter K Todd

Open access · greenAbstract read
In one paragraph

Article in Human molecular genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Yuan ZhangDepartment of Neurology, University of Michigan, Ann Arbor, MI, USA.
M Rebecca GlineburgDepartment of Neurology, University of Michigan, Ann Arbor, MI, USA.ORCID 0000-0002-8615-2894
Venkatesha BasrurDepartment of Pathology, University of Michigan, Ann Arbor, MI, USA.
Kevin ConlonDepartment of Pathology, University of Michigan, Ann Arbor, MI, USA.
Shannon E WrightDepartment of Neurology, University of Michigan, Ann Arbor, MI, USA.
Amy KransDepartment of Neurology, University of Michigan, Ann Arbor, MI, USA.
Deborah A HallDepartment of Neurological Sciences, Rush University, Chicago, IL, USA.
Peter K ToddDepartment of Neurology, University of Michigan, Ann Arbor, MI, USA.ORCID 0000-0003-4781-6376
University of Michigan · USCentral South University · CNRush University · US

Funding

The FMR1 CGG repeat as functional element and therapeutic target in Fragile X associated disordersP50HD104463 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI ALLEN, EMILY GRAVES · 2020 to 2024
$9.0M
Hexanucleotide repeat translation in ALS and Frontotemporal DementiaR01NS099280 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Peter K Todd · 2016 to 2026
$4.9M
CGG repeat associated translation in Fragile X-associated Tremor/Ataxia Syndrome-Diversity SupplementR01NS086810 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI TODD, PETER K · 2014 to 2024
$4.1M
Mechanisms of CGG RAN translation in Fragile X-associated tremor/ataxia syndromeF32NS089124 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KEARSE, MICHAEL G · 2014 to 2015
$108k
Upstream open reading frames in neuronal function: a singular and genome-wide approachF31NS090883 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RODRIGUEZ, CAITLIN MARIE · 2014 to 2017
$102k
Neuronal dysfunction in fragile X spectrum disordersF31MH097451 · NIMH · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RENOUX, ABIGAIL · 2012 to 2014
$98k
CGG repeat associated translation in Fragile X gene function and diseaseF31NS113513 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WRIGHT, SHANNON · 2020 to 2022
$84k
Bypassing cellular stress pathways in frontotemporal dementia and ALSI01BX004842 · VA · VETERANS HEALTH ADMINISTRATION · PI TODD, PETER K · 2020 to 2023
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BLRD VA I01 BX004842NICHD NIH HHS P50 HD104463NIMH NIH HHS F31 MH097451NINDS NIH HHS F31 NS090883NINDS NIH HHS F31 NS113513NINDS NIH HHS R01 NS086810NINDS NIH HHS R01 NS099280
6 · The paper itself

Abstract

Repeat associated non-AUG (RAN) translation of CGG repeats in the 5'UTR of FMR1 produces toxic proteins that contribute to fragile X-associated tremor/ataxia syndrome (FXTAS) pathogenesis. The most abundant RAN product, FMRpolyG, initiates predominantly at an ACG upstream of the repeat. Accurate FMRpolyG measurements in FXTAS patients are lacking. We used data-dependent acquisition and parallel reaction monitoring (PRM) mass spectrometry coupled with stable isotope labeled standard peptides to identify signature FMRpolyG fragments in patient samples. Following immunoprecipitation, PRM detected FMRpolyG signature peptides in transfected cells, and FXTAS tissues and cells, but not in controls. We identified two amino-terminal peptides: an ACG-initiated Ac-MEAPLPGGVR and a GUG-initiated Ac-TEAPLPGGVR, as well as evidence for RAN translation initiation within the CGG repeat itself in two reading frames. Initiation at all sites increased following cellular stress, decreased following eIF1 overexpression and was eIF4A and M7G cap-dependent. These data demonstrate that FMRpolyG is quantifiable in human samples and FMR1 RAN translation initiates via similar mechanisms for near-cognate codons and within the repeat through processes dependent on available initiation factors and cellular environment.

Indexed as

AtaxiaFragile X Syndromeran GTP-Binding ProteinTremorFragile X Messenger Ribonucleoprotein 1HumansPeptidesTrinucleotide Repeat ExpansionFMR1 protein, humanFragile X Messenger Ribonucleoprotein 1Peptidesran GTP-Binding ProteinRAN protein, human

Identifiers

PMID35137065
PMCPMC9307318
OpenAlexW4206562835

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.