Evidence map›Paper›PMID 35136085›Full record

ArticleScientific data2022

Efficient compressed database of equilibrated configurations of ring-linear polymer blends for MD simulations.

Katsumi Hagita, Takahiro Murashima, Masao Ogino, Manabu Omiya, Kenji Ono, Tetsuo Deguchi, Hiroshi Jinnai, Toshihiro Kawakatsu

Abstract read
In one paragraph

Article in Scientific data, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Katsumi HagitaDepartment of Applied Physics, National Defense Academy, 1-10-20, Hashirimizu, Yokosuka, 239-8686, Japan. hagita@nda.ac.jp.ORCID http://orcid.org/0000-0002-6708-7468
Takahiro MurashimaDepartment of Physics, Tohoku University, 6-3, Aramaki-aza-Aoba, Aoba-ku, Sendai, 980-8578, Japan.
Masao OginoFaculty of Informatics, Daido University, 10-3 Takiharu-cho, Minami-ku, Nagoya, 457-8530, Japan.
Manabu OmiyaInformation Initiative Center, Hokkaido University, Kita 11, Nishi 5, Kita-ku, Sapporo, 060-0811, Japan.
Kenji OnoResearch Institute for Information Technology, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka, 819-0395, Japan.
Tetsuo DeguchiDepartment of Physics, Ochanomizu University, 2-1-1 Ohtsuka, Bunkyo-ku, Tokyo, 112-8610, Japan.
Hiroshi JinnaiInstitute of Multidisciplinary for Advanced Materials, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai, 980-8577, Japan.
Toshihiro KawakatsuDepartment of Physics, Tohoku University, 6-3, Aramaki-aza-Aoba, Aoba-ku, Sendai, 980-8578, Japan.

Funding

MEXT | Japan Society for the Promotion of Science (JSPS) JP18H04494MEXT | Japan Society for the Promotion of Science (JSPS) JP19H00905MEXT | Japan Society for the Promotion of Science (JSPS) JP20H04649MEXT | JST | Core Research for Evolutional Science and Technology (CREST) JPMJCR1993MEXT | JST | Core Research for Evolutional Science and Technology (CREST) JPMJCR19T4
6 · The paper itself

Abstract

To effectively archive configuration data during molecular dynamics (MD) simulations of polymer systems, we present an efficient compression method with good numerical accuracy that preserves the topology of ring-linear polymer blends. To compress the fraction of floating-point data, we used the Jointed Hierarchical Precision Compression Number - Data Format (JHPCN-DF) method to apply zero padding for the tailing fraction bits, which did not affect the numerical accuracy, then compressed the data with Huffman coding. We also provided a dataset of well-equilibrated configurations of MD simulations for ring-linear polymer blends with various lengths of linear and ring polymers, including ring complexes composed of multiple rings such as polycatenane. We executed 10

Identifiers

PMID35136085
PMCPMC8825841

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.