Evidence map›Paper›PMID 35134929›Full record

ArticleGenetics2022

WormBase in 2022-data, processes, and tools for analyzing Caenorhabditis elegans.

Paul Davis, Magdalena Zarowiecki, Valerio Arnaboldi, Andrés Becerra, Scott Cain, Juancarlos Chan, Wen J Chen, Jaehyoung Cho, Eduardo da Veiga Beltrame, Stavros Diamantakis and 29 more

Abstract read
In one paragraph

Article in Genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 233 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
233citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

233 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Mapping molluscan endocrinology: a systematic and critical appraisal.Biological reviews of the Cambridge Philosophical Society · 2026
    Pooled it
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  8. Transcriptomic profiling of the embryonicbioRxiv : the preprint server for biology · 2026
    Article
  9. Pre-cuticle DPY-6 acts as a blueprint for aECM periodic organization inbioRxiv : the preprint server for biology · 2026
    Article
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  20. Article

173 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

39 authors.

Paul DavisEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.ORCID 0000-0001-5545-0824
Magdalena ZarowieckiEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Valerio ArnaboldiDivision of Biology and Biological Engineering 140-18, California Institute of Technology, Pasadena, CA 91125, USA.ORCID 0000-0002-2563-5374
Andrés BecerraEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Scott CainInformatics and Bio-computing Platform, Ontario Institute for Cancer Research, Toronto, ON M5G0A3, Canada.
Juancarlos ChanDivision of Biology and Biological Engineering 140-18, California Institute of Technology, Pasadena, CA 91125, USA.
Wen J ChenDivision of Biology and Biological Engineering 140-18, California Institute of Technology, Pasadena, CA 91125, USA.
Jaehyoung ChoDivision of Biology and Biological Engineering 140-18, California Institute of Technology, Pasadena, CA 91125, USA.
Eduardo da Veiga BeltrameDivision of Biology and Biological Engineering 140-18, California Institute of Technology, Pasadena, CA 91125, USA.
Stavros DiamantakisEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Sibyl GaoInformatics and Bio-computing Platform, Ontario Institute for Cancer Research, Toronto, ON M5G0A3, Canada.
Dionysis GrigoriadisEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Christian A GroveDivision of Biology and Biological Engineering 140-18, California Institute of Technology, Pasadena, CA 91125, USA.
Todd W HarrisInformatics and Bio-computing Platform, Ontario Institute for Cancer Research, Toronto, ON M5G0A3, Canada.ORCID 0000-0003-3406-163X
Ranjana KishoreDivision of Biology and Biological Engineering 140-18, California Institute of Technology, Pasadena, CA 91125, USA.ORCID 0000-0002-1478-7671
Tuan LeEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Raymond Y N LeeDivision of Biology and Biological Engineering 140-18, California Institute of Technology, Pasadena, CA 91125, USA.
Manuel LuypaertEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Hans-Michael MüllerDivision of Biology and Biological Engineering 140-18, California Institute of Technology, Pasadena, CA 91125, USA.
Cecilia NakamuraDivision of Biology and Biological Engineering 140-18, California Institute of Technology, Pasadena, CA 91125, USA.
Paulo NuinInformatics and Bio-computing Platform, Ontario Institute for Cancer Research, Toronto, ON M5G0A3, Canada.
Michael PauliniEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Mark Quinton-TullochEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.ORCID 0000-0001-5713-0736
Daniela RacitiDivision of Biology and Biological Engineering 140-18, California Institute of Technology, Pasadena, CA 91125, USA.
Faye H RodgersWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK.
Matthew RussellEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.ORCID 0000-0001-6140-6723
Gary SchindelmanDivision of Biology and Biological Engineering 140-18, California Institute of Technology, Pasadena, CA 91125, USA.
Archana SinghWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK.ORCID 0000-0002-5027-4582
Tim SticklandWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK.
Kimberly Van AukenDivision of Biology and Biological Engineering 140-18, California Institute of Technology, Pasadena, CA 91125, USA.
Qinghua WangDivision of Biology and Biological Engineering 140-18, California Institute of Technology, Pasadena, CA 91125, USA.
Gary WilliamsEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Adam J WrightInformatics and Bio-computing Platform, Ontario Institute for Cancer Research, Toronto, ON M5G0A3, Canada.
Karen YookDivision of Biology and Biological Engineering 140-18, California Institute of Technology, Pasadena, CA 91125, USA.
Matt BerrimanWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK.
Kevin L HoweEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Tim SchedlDepartment of Genetics, Washington University School of Medicine, St Louis, MO 63110, USA.
Lincoln SteinInformatics and Bio-computing Platform, Ontario Institute for Cancer Research, Toronto, ON M5G0A3, Canada.
Paul W SternbergDivision of Biology and Biological Engineering 140-18, California Institute of Technology, Pasadena, CA 91125, USA.ORCID 0000-0002-7699-0173

Funding

Text mining in the CloudU24HG010859 · NHGRI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI CAROL J BULT, PAUL Warren STERNBERG · 2019 to 2026
$42.0M
WormBase: a core data resource for C. elegans and other nematodesU24HG002223 · NHGRI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI TIM SCHEDL, PAUL Warren STERNBERG · 2018 to 2026
$18.9M
Curation at scale: Integrating AI into community curationR01LM013871 · NLM · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI STERNBERG, PAUL WARREN · 2021 to 2024
$1.4M
Medical Research Council MR/S000453/1NHGRI NIH HHS U24 HG002223NHGRI NIH HHS U24 HG010859NLM NIH HHS R01 LM013871
6 · The paper itself

Abstract

WormBase (www.wormbase.org) is the central repository for the genetics and genomics of the nematode Caenorhabditis elegans. We provide the research community with data and tools to facilitate the use of C. elegans and related nematodes as model organisms for studying human health, development, and many aspects of fundamental biology. Throughout our 22-year history, we have continued to evolve to reflect progress and innovation in the science and technologies involved in the study of C. elegans. We strive to incorporate new data types and richer data sets, and to provide integrated displays and services that avail the knowledge generated by the published nematode genetics literature. Here, we provide a broad overview of the current state of WormBase in terms of data type, curation workflows, analysis, and tools, including exciting new advances for analysis of single-cell data, text mining and visualization, and the new community collaboration forum. Concurrently, we continue the integration and harmonization of infrastructure, processes, and tools with the Alliance of Genome Resources, of which WormBase is a founding member.

Indexed as

CaenorhabditisNematodaAnimalsCaenorhabditis elegansDatabases, GeneticGenomeGenomicsHumansannotationcaenorhabditisCaenorhabditis eleganscommunitycurationdatadatabasegenehealthhumanliteratureminingmodelnematodeplatformresearchresourcesoftwaretools

Identifiers

PMID35134929
PMCPMC8982018

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.