Evidence map›Paper›PMID 35133988›Full record

ArticleJCI insight2022

T cell response to intact SARS-CoV-2 includes coronavirus cross-reactive and variant-specific components.

Lichen Jing, Xia Wu, Maxwell P Krist, Tien-Ying Hsiang, Victoria L Campbell, Christopher L McClurkan, Sydney M Favors, Lawrence A Hemingway, Charmie Godornes, Denise Q Tong and 8 more

Open access · goldAbstract read
In one paragraph

Article in JCI insight, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
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  6. Review
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  12. Spike-specific T-cell responses in patients with COVID-19 successfully treated with neutralizing monoclonal antibodies against SARS-CoV-2.International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2022
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors at 2 institutions in 1 country.

Lichen JingDepartment of Medicine.
Xia WuDepartment of Medicine.
Maxwell P KristDepartment of Medicine.
Tien-Ying HsiangDepartment of Immunology, and.
Victoria L CampbellDepartment of Medicine.
Christopher L McClurkanDepartment of Medicine.
Sydney M FavorsDepartment of Medicine.
Lawrence A HemingwayDepartment of Medicine.
Charmie GodornesDepartment of Medicine.
Denise Q TongDepartment of Medicine.
Stacy SelkeDepartment of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, USA.
Angela C LeClairDepartment of Medicine.
Chu-Woo PyoClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA.
Daniel E GeraghtyClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA.
Kerry J LaingDepartment of Medicine.
Anna WaldDepartment of Medicine.
Michael GaleDepartment of Immunology, and.
David M KoelleDepartment of Medicine.
University of Washington · USFred Hutch Cancer Center · US

Funding

University of Washington Arboviral Research Network (UWARN)U01AI151698 · NIAID · UNIVERSITY OF WASHINGTON · PI Michael Gale, PETER MACGARR RABINOWITZ · 2020 to 2026
$13.3M
Large Scale T Cell Epitope Discovery: Local and Systemic T cell Response to Herpes Simplex Virus75N93019C00063 · NIAID · UNIVERSITY OF WASHINGTON · PI MYER, TIM · 2019 to 2023
$5.5M
Innate Immune Control of West Nile VirusR01AI104002 · NIAID · UNIVERSITY OF WASHINGTON · PI DIAMOND, MICHAEL S, GALE, MICHAEL · 2013 to 2017
$3.7M
The Host Response to Hepatitis C VirusR01AI118916 · NIAID · UNIVERSITY OF WASHINGTON · PI GALE, MICHAEL · 2016 to 2020
$2.5M
Host inflammatory response to SARS-CoV-2R21AI158788 · NIAID · UNIVERSITY OF WASHINGTON · PI GALE, MICHAEL · 2021 to 2022
$485k
C19 SARS-CoV-2-specific T cells in the infected nasel epitheliumR21AI163999 · NIAID · UNIVERSITY OF WASHINGTON · PI KOELLE, DAVID M · 2021 to 2022
$485k
NIAID NIH HHS 75N93019C00063NIAID NIH HHS HHSN272201600027CNIAID NIH HHS R01 AI104002NIAID NIH HHS R01 AI118916NIAID NIH HHS R21 AI158788NIAID NIH HHS R21 AI163999NIAID NIH HHS U01 AI151698
6 · The paper itself

Abstract

SARS-CoV-2 provokes a robust T cell response. Peptide-based studies exclude antigen processing and presentation biology, which may influence T cell detection studies. To focus on responses to whole virus and complex antigens, we used intact SARS-CoV-2 and full-length proteins with DCs to activate CD8 and CD4 T cells from convalescent people. T cell receptor (TCR) sequencing showed partial repertoire preservation after expansion. Resultant CD8 T cells recognize SARS-CoV-2-infected respiratory tract cells, and CD4 T cells detect inactivated whole viral antigen. Specificity scans with proteome-covering protein/peptide arrays show that CD8 T cells are oligospecific per subject and that CD4 T cell breadth is higher. Some CD4 T cell lines enriched using SARS-CoV-2 cross-recognize whole seasonal coronavirus (sCoV) antigens, with protein, peptide, and HLA restriction validation. Conversely, recognition of some epitopes is eliminated for SARS-CoV-2 variants, including spike (S) epitopes in the Alpha, Beta, Gamma, and Delta variant lineages.

Indexed as

Antigen-presenting cellsDendritic cellsInfectious diseaseT cells

Identifiers

PMID35133988
PMCPMC8986086
OpenAlexW4226178540

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.