Evidence map›Paper›PMID 35129654›Full record

ArticleApplied microbiology and biotechnology2022

Unusual substrate specificity in GH family 12: structure-function analysis of glucanases Bgh12A and Xgh12B from Aspergillus cervinus, and Egh12 from Thielavia terrestris.

Sergey V Rykov, Alina I Selimzyanova, Alena Y Nikolaeva, Vladimir A Lazarenko, Nikita V Tsurin, Philipp I Akentyev, Vladimir V Zverlov, Wolfgang Liebl, Wolfgang H Schwarz, Oksana V Berezina

Abstract read
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Article in Applied microbiology and biotechnology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 10 citations in OpenAlex.

  1. Thermostable enzyme research advances: a bibliometric analysis.Journal, genetic engineering & biotechnology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Sergey V RykovNational Research Center «Kurchatov Institute» - GOSNIIGENETIKA, Kurchatov Genomic Center, 1-st Dorozhniy pr. 1, 117545, Moscow, Russian Federation.
Alina I SelimzyanovaNational Research Center «Kurchatov Institute» - GOSNIIGENETIKA, Kurchatov Genomic Center, 1-st Dorozhniy pr. 1, 117545, Moscow, Russian Federation.
Alena Y NikolaevaNational Research Center «Kurchatov Institute» - Institute of Molecular Genetics, Kurchatov Sq. 2, 123182, Moscow, Russian Federation.
Vladimir A LazarenkoNational Research Center «Kurchatov Institute» - Institute of Molecular Genetics, Kurchatov Sq. 2, 123182, Moscow, Russian Federation.
Nikita V TsurinNational Research Center «Kurchatov Institute» - GOSNIIGENETIKA, Kurchatov Genomic Center, 1-st Dorozhniy pr. 1, 117545, Moscow, Russian Federation.
Philipp I AkentyevNational Research Center «Kurchatov Institute» - GOSNIIGENETIKA, Kurchatov Genomic Center, 1-st Dorozhniy pr. 1, 117545, Moscow, Russian Federation.
Vladimir V ZverlovNational Research Center «Kurchatov Institute» - Institute of Molecular Genetics, Kurchatov Sq. 2, 123182, Moscow, Russian Federation. vladimir.zverlov@tum.de.
Wolfgang LieblChair of Microbiology, Technical University of Munich, Emil-Ramann-Str. 4, 85354, Freising, Germany.
Wolfgang H SchwarzAspratis GmbH, Huebnerstr. 11, 80637, Munich, Germany.
Oksana V BerezinaNational Research Center «Kurchatov Institute» - GOSNIIGENETIKA, Kurchatov Genomic Center, 1-st Dorozhniy pr. 1, 117545, Moscow, Russian Federation. mashchenko@yandex.ru.ORCID http://orcid.org/0000-0003-4868-0589
Kurchatov Institute · RUTechnical University of Munich · DE

Funding

Ministry of Science and Higher Education of the Russian Federation 075-15-2019-1658
6 · The paper itself

Abstract

In this study, we compared the properties and structures of three fungal GH12 enzymes: the strict endoglucanase Bgh12A and the xyloglucanase Xgh12B from Aspergillus cervinus, and the endoglucanase Egh12 from Thielavia terrestris combining activity on linear β-glucan and branched xyloglucan. Egh12 from T. terrestris was produced in Pichia pastoris, purified, and characterized as a thermostable enzyme with maximal activity at 70 ºC and a half-life time of 138 min at 65 °C. We for the first time demonstrated that the GH12 endoglucanases Egh12 and Bgh12A, but not the strict xyloglucanase Xgh12B, hydrolyzed (1,3)-β-linkages in (1,3;1,4)-β-D-glucooligosaccharides and had transglycosylase activity on (1,3)-β-D-glucooligosaccharides. Phylogenetic analysis indicated that Egh12 from T. terrestris and Bgh12A from A. cervinus are more related than Bgh12A and Xgh12B isolated from one strain. The X-ray structure of Bgh12A was determined with 2.17 Å resolution and compared with 3D-homology models of Egh12 and Xgh12B. The enzymes have a β-jelly roll structure with a catalytic cleft running across the protein. Comparative analysis and a docking study demonstrated the importance of endoglucanase-specific loop 1 partly covering the catalytic cleft for correct placement of the linear substrates. Variability in substrate specificity between the GH12 endoglucanases is determined by non-conservative residues in structural loops framing the catalytic cleft. A residue responsible for the thermostability of Egh12 was predicted. The key structural elements and residues described in this study may serve as potential targets for modification aimed at the improvement of enzymatic properties. KEY POINTS: • Thermostable endoglucanase Egh12 from T. terrestris was produced in P. pastoris, purified, and characterized • The X-ray structure of GH12 endoglucanase Bgh12A from A. cervinus was resolved • GH12 endoglucanases, but not GH12 xyloglucanases, hydrolyze (1,3)-β-linkages in (1,3;1,4)-β-D-glucooligosaccharides.

Indexed as

CellulaseSordarialesAspergillusPhylogenySubstrate SpecificityCellulase3D-structureAspergillus cervinusCrystallizationGH12 xyloglucanases and endoglucanasesMixed-linked (1,3;1,4)-β-D-glucansThielavia terrestris

Identifiers

PMID35129654
OpenAlexW4210902767

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.