Evidence map›Paper›PMID 35129304›Full record

ArticleSmall (Weinheim an der Bergstrasse, Germany)2022

Plasmonic LAMP: Improving the Detection Specificity and Sensitivity for SARS-CoV-2 by Plasmonic Sensing of Isothermally Amplified Nucleic Acids.

Haihang Ye, Chance Nowak, Yaning Liu, Yi Li, Tingting Zhang, Leonidas Bleris, Zhenpeng Qin

Abstract read
In one paragraph

Article in Small (Weinheim an der Bergstrasse, Germany), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. A well-designed bridge probe with dual functions of recognition and transduction towards a universal LAMP system.Analytical sciences : the international journal of the Japan Society for Analytical Chemistry · 2026
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  14. Zoonoses (Shannon, Ireland) · 2023
    Article
  15. Review
  16. Accurate Detection ofFoods (Basel, Switzerland) · 2022
    Article
  17. Review
  18. Article
  19. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Haihang YeDepartment of Mechanical Engineering, The University of Texas at Dallas, Richardson, TX, 75080, USA.
Chance NowakCenter of Systems Biology, The University of Texas at Dallas, Richardson, TX, 75080, USA.
Yaning LiuDepartment of Mechanical Engineering, The University of Texas at Dallas, Richardson, TX, 75080, USA.
Yi LiCenter of Systems Biology, The University of Texas at Dallas, Richardson, TX, 75080, USA.
Tingting ZhangDepartment of Mechanical Engineering, The University of Texas at Dallas, Richardson, TX, 75080, USA.
Leonidas BlerisCenter of Systems Biology, The University of Texas at Dallas, Richardson, TX, 75080, USA.
Zhenpeng QinDepartment of Mechanical Engineering, The University of Texas at Dallas, Richardson, TX, 75080, USA.ORCID 0000-0003-3406-3045

Funding

Rapid Diagnostic Test for Respiratory Syncytial Virus by Digital NanobubblesR01AI151374 · NIAID · UNIVERSITY OF TEXAS DALLAS · PI QIN, ZHENPENG · 2020 to 2024
$2.5M
Cecil H. and Ida Green Endowment to the University of Texas at DallasNational Science Foundation 1361355NIAID NIH HHS R01 AI151374NIH HHS R01AI151374U.S. Department of Defense PR192581
6 · The paper itself

Abstract

The ability to detect pathogens specifically and sensitively is critical to combat infectious diseases outbreaks and pandemics. Colorimetric assays involving loop-mediated isothermal amplification (LAMP) provide simple readouts yet suffer from the intrinsic non-template amplification. Herein, a highly specific and sensitive assay relying on plasmonic sensing of LAMP amplicons via DNA hybridization, termed as plasmonic LAMP, is developed for the severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2) RNA detection. This work has two important advances. First, gold and silver (Au-Ag) alloy nanoshells are developed as plasmonic sensors that have 4-times stronger extinction in the visible wavelengths and give a 20-times lower detection limit for oligonucleotides over Au counterparts. Second, the integrated method allows cutting the complex LAMP amplicons into short repeats that are amendable for hybridization with oligonucleotide-functionalized Au-Ag nanoshells. In the SARS-CoV-2 RNA detection, plasmonic LAMP takes ≈75 min assay time, achieves a detection limit of 10 copies per reaction, and eliminates the contamination from non-template amplification. It also shows better detection specificity and sensitivity over commercially available LAMP kits due to the additional sequence identification. This work opens a new route for LAMP amplicon detection and provides a method for virus testing at its early representation.

Indexed as

COVID-19Nucleic AcidsHumansMolecular Diagnostic TechniquesNucleic Acid Amplification TechniquesRNA, ViralSARS-CoV-2Sensitivity and SpecificityNucleic AcidsRNA, Viralhollow nanostructureshomogeneous assaysloop-mediated isothermal amplificationplasmonicsSARS-CoV-2

Identifiers

PMID35129304
PMCPMC9052780

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.