Evidence map›Paper›PMID 35129067›Full record

ArticleBioengineered2022

16S rDNA sequencing analyzes differences in intestinal flora of human immunodeficiency virus (HIV) patients and association with immune activation.

Zhang Mingjun, Mo Fei, Xu Zhousong, Xu Wei, Xu Jian, Yi Yuanxue, Shen Youfeng, Chen Zhongping, Long Yiqin, Zhao Xiaohong and 4 more

Open access · goldAbstract read
In one paragraph

Article in Bioengineered, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 12 citations in OpenAlex.

  1. Pooled it
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  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Zhang MingjunState Key Laboratory for Diagnosis and Treatment of Infectious Diseases, National Clinical Research Center for Infectious Diseases, National Medical Center for Infectious Diseases, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, The First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China.
Mo FeiDepartment of Laboratory Medicine, People's Hospital of Jiulongpo District, Chongqing, China.
Xu ZhousongDepartment of Laboratory Medicine, People's Hospital of Jiulongpo District, Chongqing, China.
Xu WeiDepartment of Laboratory Medicine, Hangzhou Shulan Hospital, Zhejiang University, Hangzhou, China.
Xu JianDepartment of Laboratory Medicine, Chongqing Precision Medical Industry Technology Research Institute, Chongqing, China.
Yi YuanxueDepartment of Laboratory Medicine, Chongqing Precision Medical Industry Technology Research Institute, Chongqing, China.
Shen YoufengDepartment of Laboratory Medicine, Chongqing Precision Medical Industry Technology Research Institute, Chongqing, China.
Chen ZhongpingDepartment of Laboratory Medicine, People's Hospital of Jiulongpo District, Chongqing, China.
Long YiqinDepartment of Laboratory Medicine, People's Hospital of Jiulongpo District, Chongqing, China.
Zhao XiaohongDepartment of Laboratory Medicine, People's Hospital of Jiulongpo District, Chongqing, China.
Cheng YingDepartment of Laboratory Medicine, Hangzhou Shulan Hospital, Zhejiang University, Hangzhou, China.
Wang ZhenbingDepartment of Laboratory Medicine, Chongqing Precision Medical Industry Technology Research Institute, Chongqing, China.
Deng ZehuDepartment of Laboratory Medicine, People's Hospital of Jiulongpo District, Chongqing, China.
Li LanjuanState Key Laboratory for Diagnosis and Treatment of Infectious Diseases, National Clinical Research Center for Infectious Diseases, National Medical Center for Infectious Diseases, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, The First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China.
Chongqing Jiulongpo People's Hospital · CNZhejiang University · CNNational Clinical Research Center for Digestive Diseases · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To clarify the influence of HIV on the intestinal flora and the interrelationship with CD4 T cells, the present study collected stool specimens from 33 HIV patients and 28 healthy subjects to compare the differences in the intestinal flora and CD4 T cells in a 16S rDNA-sequencing approach. ELISA was used to detect the expressions of interleukin 2 (IL-2), IL-8, and tumor necrosis factor-α (TNF-α). Meanwhile, correlation analysis with the different bacterial populations in each group was carried out. The results revealed that Alpha diversity indices of the intestinal flora of HIV patients were markedly lower than that of the healthy group (p < 0.05). The top five bacterial species in the HIV group were Bacteroides (23.453%), Prevotella (19.237%), Fusobacterium (12.408%), Lachnospira (3.811%), and Escherichia-Shigella (3.126%). Spearman correlation analysis results indicated that Fusobacterium_mortiferum, Fusobacterium, and Gammaproteobacteria were positively correlated with TNF-α (p < 0.05), whereas Ruminococcaceae, Bacteroidales was negatively correlated with TNF-α (p < 0.05). Additionally, Agathobacter was positively correlated with contents of IL-2 and IL-8 (p < 0.05), whereas Prevotellaceae, and Prevotella were negatively correlated with IL-8 content (p < 0.05). Furthermore, the top five strains in the CD4 high group (≥350/mm

Indexed as

HIV InfectionsCase-Control StudiesCD4-Positive T-LymphocytesCytokinesDNA, BacterialFecesGastrointestinal MicrobiomeHumansRNA, Ribosomal, 16SSequence Analysis, DNACytokinesDNA, BacterialRNA, Ribosomal, 16S16s rDNAAIDSHIVintestinal flora

Identifiers

PMID35129067
PMCPMC8974104
OpenAlexW4210633776

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.