Evidence map›Paper›PMID 35127939›Full record

ArticleBioMed research international2022

Identification of Potential Key Genes and Molecular Mechanisms of Medulloblastoma Based on Integrated Bioinformatics Approach.

Md Rakibul Islam, Lway Faisal Abdulrazak, Mohammad Khursheed Alam, Bikash Kumar Paul, Kawsar Ahmed, Francis M Bui, Mohammad Ali Moni

RetractedOpen access · hybridAbstract readRetracted Publication
In one paragraph

Article in BioMed research international, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

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  6. NF-YAl drives EMT in ClaudinCell death & disease · 2023
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 6 countries.

Md Rakibul IslamDepartment of Software Engineering, Daffodil International University (DIU), Ashulia, Savar, Dhaka 1342, Bangladesh.ORCID https://orcid.org/0000-0001-8025-2627
Lway Faisal AbdulrazakDepartment of Computer Science, Cihan University Sulaimaniya, Sulaimaniya, 46001 Kurdistan Region, Iraq.ORCID https://orcid.org/0000-0003-0018-8288
Mohammad Khursheed AlamDepartment of Preventive Dental Science, College of Dentistry, Jouf University, Sakaka, 72345 Aljouf, Saudi Arabia.ORCID https://orcid.org/0000-0001-7131-1752
Bikash Kumar PaulDepartment of Software Engineering, Daffodil International University (DIU), Ashulia, Savar, Dhaka 1342, Bangladesh.ORCID https://orcid.org/0000-0002-4414-2751
Kawsar AhmedGroup of Bio-Photomatix, Department of Information and Communication Technology, Mawlana Bhashani Science and Technology University (MBSTU), Santosh, Tangail 1902, Bangladesh.ORCID https://orcid.org/0000-0002-4034-9819
Francis M BuiDepartment of Electrical and Computer Engineering, University of Saskatchewan, 57 Campus Drive, Saskatoon, SK, Canada S7N 5A9.ORCID https://orcid.org/0000-0002-8799-5965
Mohammad Ali MoniSchool of Health and Rehabilitation Sciences, Faculty of Health and Behavioural Sciences, The University of Queensland, St Lucia, QLD 4072, Australia.ORCID https://orcid.org/0000-0003-0756-1006
Daffodil International University · BDUniversity of Saskatchewan · CACihan University-Erbil · IQJouf University · SAThe University of Queensland · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMedulloblastoma (MB) is the most occurring brain cancer that mostly happens in childhood age. This cancer starts in the cerebellum part of the brain. This study is designed to screen novel and significant biomarkers, which may perform as potential prognostic biomarkers and therapeutic targets in MB.

methodsA total of 103 MB-related samples from three gene expression profiles of GSE22139, GSE37418, and GSE86574 were downloaded from the Gene Expression Omnibus (GEO). Applying the limma package, all three datasets were analyzed, and 1065 mutual DEGs were identified including 408 overexpressed and 657 underexpressed with the minimum cut-off criteria of ∣log fold change | >1 and

resultsFour key clusters were identified using the PEWCC 1.0 method. Additionally, the survival analysis of hub genes was brought out based on clinical information of 612 MB patients. This bioinformatics analysis may help to define the pathogenesis and originate new treatments for MB.

Indexed as

Cerebellar NeoplasmsMedulloblastomaBiomarkersComputational BiologyDatabases, GeneticGene Expression ProfilingGene Expression Regulation, NeoplasticHumansProtein Interaction MapsBiomarkers

Identifiers

PMID35127939
PMCPMC8816556
OpenAlexW4206624173

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.