Evidence map›Paper›PMID 35127560›Full record

ArticleFrontiers in cellular and infection microbiology2021

Tra2beta-Dependent Regulation of RIO Kinase 3 Splicing During Rift Valley Fever Virus Infection Underscores the Links Between Alternative Splicing and Innate Antiviral Immunity.

Luke Adam White, Thomas C Bisom, Hunter L Grimes, Miyuki Hayashi, Jean-Marc Lanchy, J Stephen Lodmell

Open access · goldAbstract read
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Mechanism of Immune Evasion in Mosquito-Borne Diseases.Pathogens (Basel, Switzerland) · 2023
    Review
  7. Review
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Luke Adam WhiteDivision of Biological Sciences, University of Montana, Missoula, MT, United States.
Thomas C BisomDepartment of Chemistry and Biochemistry, University of Montana, Missoula, MT, United States.
Hunter L GrimesDivision of Biological Sciences, University of Montana, Missoula, MT, United States.
Miyuki HayashiDepartment of Chemistry and Biochemistry, University of Montana, Missoula, MT, United States.
Jean-Marc LanchyDivision of Biological Sciences, University of Montana, Missoula, MT, United States.
J Stephen LodmellDivision of Biological Sciences, University of Montana, Missoula, MT, United States.
University of Montana · US

Funding

Surveillance genome sequencing to detect SARS-CoV-2 virus variants in MontanaP20GM103546 · NIGMS · UNIVERSITY OF MONTANA · PI BOWLER, BRUCE E · 2012 to 2021
$19.2M
ASCEND, Accelerating Solutions for Commercialization and Entrepreneurial Development in the Mountain West IDeA StatesUT2GM130166 · NIGMS · VIRTICI, LLC · PI FANGER, NEIL A · 2018 to 2020
$3.6M
Novel therapeutic target to combat cutaneous lupusR41TR003929 · NCATS · DERMAXON, LLC · PI ASTRUC DIAZ, FANNY · 2021 to 2021
$298k
A role for snoRNAs in RVFV-induced enhancement of alternative splicingR03AI137620 · NIAID · UNIVERSITY OF MONTANA · PI LODMELL, J. STEPHEN · 2019 to 2020
$145k
Role of the atypical protein kinase RIOK3 in the cellular antiviral responseR03TR002937 · NCATS · UNIVERSITY OF MONTANA · PI LODMELL, J. STEPHEN · 2019 to 2019
$143k
Integrated Phosphor and Fluorescence Imager (Typhoon FLA9500)S10OD021710 · OD · UNIVERSITY OF MONTANA · PI NUNBERG, JACK H · 2016 to 2016
$138k
NCATS NIH HHS R03 TR002937NCATS NIH HHS R41 TR003929NIAID NIH HHS R03 AI137620NIGMS NIH HHS P20 GM103546NIGMS NIH HHS UT2 GM130166NIH HHS S10 OD021710
6 · The paper itself

Abstract

Rift Valley fever virus (RVFV) is an emerging pathogen that has potential to cause severe disease in humans and domestic livestock. Propagation of RVFV strain MP-12 is negatively impacted by the actions of RIOK3, a protein involved in the cellular immune response to viral infection. During RVFV infection, RIOK3 mRNA is alternatively spliced to produce an isoform that correlates with the inhibition of interferon β signaling. Here, we identify splicing factor TRA2-β (also known as TRA2beta and hTRA2-β) as a key regulator governing the relative abundance of RIOK3 splicing isoforms. Using RT-PCR and minigenes, we determined that TRA2-β interaction with RIOK3 pre-mRNA was necessary for constitutive splicing of RIOK3 mRNA, and conversely, lack of TRA2-β engagement led to increased alternative splicing. Expression of TRA2-β was found to be necessary for RIOK3's antiviral effect against RVFV. Intriguingly, TRA2-β mRNA is also alternatively spliced during RVFV infection, leading to a decrease in cellular TRA2-β protein levels. These results suggest that splicing modulation serves as an immune evasion strategy by RVFV and/or is a cellular mechanism to prevent excessive immune response. Furthermore, the results suggest that TRA2-β can act as a key regulator of additional steps of the innate immune response to viral infection.

Indexed as

Rift Valley FeverRift Valley fever virusAlternative SplicingAnimalsHumansImmunity, Innatealternative splicinginnate immunityRift Valley fever virusRNA virusessplicing factorsviral infection

Identifiers

PMID35127560
PMCPMC8807687
OpenAlexW4205210592

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.