Evidence map›Paper›PMID 35123975›Full record

ArticleThe American journal of pathology2022

Signals of Significantly Increased Vaccine Breakthrough, Decreased Hospitalization Rates, and Less Severe Disease in Patients with Coronavirus Disease 2019 Caused by the Omicron Variant of Severe Acute Respiratory Syndrome Coronavirus 2 in Houston, Texas.

Paul A Christensen, Randall J Olsen, S Wesley Long, Richard Snehal, James J Davis, Matthew Ojeda Saavedra, Kristina Reppond, Madison N Shyer, Jessica Cambric, Ryan Gadd and 10 more

Open access · greenAbstract read
In one paragraph

Article in The American journal of pathology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 134 papers, 6 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
134citing papers in PubMed, 6 pooled it
22.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

134 citing papers in PubMed, 6 syntheses or guidelines pooled it, 221 citations in OpenAlex.

  1. Pooled it
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  4. Clinical outcomes of the severe acute respiratory syndrome coronavirus 2 Omicron and Delta variant: systematic review and meta-analysis of 33 studies covering 6 037 144 coronavirus disease 2019-positive patients.Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases · 2023
    Pooled it
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74 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 4 institutions in 1 country.

Paul A ChristensenLaboratory of Molecular and Translational Human Infectious Diseases Research, Houston Methodist Hospital, Houston, Texas; Laboratory of Antibody Discovery and Accelerated Protein Therapeutics, Center for Infectious Diseases, Houston Methodist Research Institute and Department of Pathology and Genomic Medicine, Houston Methodist Hospital, Houston, Texas; Department of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, New York.
Randall J OlsenLaboratory of Molecular and Translational Human Infectious Diseases Research, Houston Methodist Hospital, Houston, Texas; Laboratory of Antibody Discovery and Accelerated Protein Therapeutics, Center for Infectious Diseases, Houston Methodist Research Institute and Department of Pathology and Genomic Medicine, Houston Methodist Hospital, Houston, Texas; Department of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, New York.
S Wesley LongLaboratory of Molecular and Translational Human Infectious Diseases Research, Houston Methodist Hospital, Houston, Texas; Laboratory of Antibody Discovery and Accelerated Protein Therapeutics, Center for Infectious Diseases, Houston Methodist Research Institute and Department of Pathology and Genomic Medicine, Houston Methodist Hospital, Houston, Texas; Department of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, New York.
Richard SnehalLaboratory of Molecular and Translational Human Infectious Diseases Research, Houston Methodist Hospital, Houston, Texas.
James J DavisConsortium for Advanced Science and Engineering, University of Chicago, Chicago, Illinois; Computing, Environment and Life Sciences, Argonne National Laboratory, Lemont, Illinois.
Matthew Ojeda SaavedraLaboratory of Molecular and Translational Human Infectious Diseases Research, Houston Methodist Hospital, Houston, Texas.
Kristina ReppondLaboratory of Molecular and Translational Human Infectious Diseases Research, Houston Methodist Hospital, Houston, Texas.
Madison N ShyerLaboratory of Molecular and Translational Human Infectious Diseases Research, Houston Methodist Hospital, Houston, Texas.
Jessica CambricLaboratory of Molecular and Translational Human Infectious Diseases Research, Houston Methodist Hospital, Houston, Texas.
Ryan GaddLaboratory of Molecular and Translational Human Infectious Diseases Research, Houston Methodist Hospital, Houston, Texas.
Rashi M ThakurLaboratory of Molecular and Translational Human Infectious Diseases Research, Houston Methodist Hospital, Houston, Texas.
Akanksha BatajooLaboratory of Molecular and Translational Human Infectious Diseases Research, Houston Methodist Hospital, Houston, Texas.
Regan ManghamLaboratory of Molecular and Translational Human Infectious Diseases Research, Houston Methodist Hospital, Houston, Texas.
Sindy PenaLaboratory of Molecular and Translational Human Infectious Diseases Research, Houston Methodist Hospital, Houston, Texas.
Trina TrinhLaboratory of Molecular and Translational Human Infectious Diseases Research, Houston Methodist Hospital, Houston, Texas.
Jacob C KinskeyLaboratory of Molecular and Translational Human Infectious Diseases Research, Houston Methodist Hospital, Houston, Texas.
Guy WilliamsLaboratory of Molecular and Translational Human Infectious Diseases Research, Houston Methodist Hospital, Houston, Texas.
Robert OlsonConsortium for Advanced Science and Engineering, University of Chicago, Chicago, Illinois; Computing, Environment and Life Sciences, Argonne National Laboratory, Lemont, Illinois.
Jimmy GolliharLaboratory of Antibody Discovery and Accelerated Protein Therapeutics, Center for Infectious Diseases, Houston Methodist Research Institute and Department of Pathology and Genomic Medicine, Houston Methodist Hospital, Houston, Texas.
James M MusserLaboratory of Molecular and Translational Human Infectious Diseases Research, Houston Methodist Hospital, Houston, Texas; Laboratory of Antibody Discovery and Accelerated Protein Therapeutics, Center for Infectious Diseases, Houston Methodist Research Institute and Department of Pathology and Genomic Medicine, Houston Methodist Hospital, Houston, Texas; Department of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, New York. Electronic address: jmmusser@houstonmethodist.org.
Methodist Hospital · USCornell University · USArgonne National Laboratory · USHouston Methodist · US

Funding

BIOINFORMATICS RESOURCE CENTERS FOR INFECTIOUS DISEASES: SARS-CoV-2 ACTIVITIES75N93019C00076 · NIAID · UNIVERSITY OF CHICAGO · PI STEVENS, RICK · 2019 to 2023
$32.6M
NIAID NIH HHS 75N93019C00076
6 · The paper itself

Abstract

Genetic variants of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) continue to dramatically alter the landscape of the coronavirus disease 2019 (COVID-19) pandemic. The recently described variant of concern designated Omicron (B.1.1.529) has rapidly spread worldwide and is now responsible for the majority of COVID-19 cases in many countries. Because Omicron was recognized recently, many knowledge gaps exist about its epidemiology, clinical severity, and disease course. A genome sequencing study of SARS-CoV-2 in the Houston Methodist health care system identified 4468 symptomatic patients with infections caused by Omicron from late November 2021 through January 5, 2022. Omicron rapidly increased in only 3 weeks to cause 90% of all new COVID-19 cases, and at the end of the study period caused 98% of new cases. Compared with patients infected with either Alpha or Delta variants in our health care system, Omicron patients were significantly younger, had significantly increased vaccine breakthrough rates, and were significantly less likely to be hospitalized. Omicron patients required less intense respiratory support and had a shorter length of hospital stay, consistent with on average decreased disease severity. Two patients with Omicron stealth sublineage BA.2 also were identified. The data document the unusually rapid spread and increased occurrence of COVID-19 caused by the Omicron variant in metropolitan Houston, Texas, and address the lack of information about disease character among US patients.

Indexed as

COVID-19VaccinesHospitalizationHumansSARS-CoV-2TexasVaccines

Identifiers

PMID35123975
PMCPMC8812084
OpenAlexW4210585911

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.