Evidence map›Paper›PMID 35123001›Full record

ReviewJournal of structural biology2022

Structural principles of CRISPR-Cas enzymes used in nucleic acid detection.

Anuska Das, Hemant N Goswami, Charlisa T Whyms, Sagar Sridhara, Hong Li

Open access · hybridAbstract readReview
In one paragraph

Review in Journal of structural biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. HIV infection detection using CRISPR/Cas systems: Present and future prospects.Computational and structural biotechnology journal · 2023
    Review
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Anuska DasInstitute of Molecular Biophysics, Florida State University, Tallahassee, FL 32306, USA.
Hemant N GoswamiInstitute of Molecular Biophysics, Florida State University, Tallahassee, FL 32306, USA.
Charlisa T WhymsDepartment of Chemistry and Biochemistry, Florida State University, Tallahassee, FL 32306, USA.
Sagar SridharaInstitute of Molecular Biophysics, Florida State University, Tallahassee, FL 32306, USA.
Hong LiInstitute of Molecular Biophysics, Florida State University, Tallahassee, FL 32306, USA; Department of Chemistry and Biochemistry, Florida State University, Tallahassee, FL 32306, USA. Electronic address: hong.li@fsu.edu.
Florida State University · US

Funding

Structures of RNA Processing and Silencing Enzymes in ProkaryotesR01GM099604 · NIGMS · FLORIDA STATE UNIVERSITY · PI STROUPE, M. ELIZABETH · 2012 to 2023
$3.3M
Mechanisms and Applications of RNA-mediated Enzymes in Translation and ImmunityR35GM152081 · NIGMS · VAN ANDEL RESEARCH INSTITUTE · PI Hong Li · 2024 to 2026
$1.8M
NIGMS NIH HHS R01 GM099604NIGMS NIH HHS R35 GM152081
6 · The paper itself

Abstract

Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR)-based technology has revolutionized the field of biomedicine with broad applications in genome editing, therapeutics and diagnostics. While a majority of applications involve the RNA-guided site-specific DNA or RNA cleavage by CRISPR enzymes, recent successes in nucleic acid detection rely on their collateral and non-specific cleavage activated by viral DNA or RNA. Ranging in enzyme composition, the mechanism for distinguishing self- from foreign-nucleic acids, the usage of second messengers, and enzymology, the CRISPR enzymes provide a diverse set of diagnosis tools in further innovations. Structural biology plays an important role in elucidating the mechanisms of these CRISPR enzymes. Here we summarize and compare structures of three types of CRISPR enzymes used in nucleic acid detection captured in their respective functional forms and illustrate the current understanding of their activation mechanism.

Indexed as

CRISPR-Cas SystemsGene EditingDNARNADNARNACard1Cas12Cas13CmrCRISPR-Cas enzyme structuresCsmCsm6Csx1Nucleic acid detection

Identifiers

PMID35123001
PMCPMC8924977
OpenAlexW4210754996

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.