Evidence map›Paper›PMID 35119506›Full record

ArticleCurrent genetics2022

Investigating cell autonomy in microorganisms.

Sarah Piccirillo, Andrew P Morgan, Andy Y Leon, Annika L Smith, Saul M Honigberg

Open access · greenAbstract read
In one paragraph

Article in Current genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 99% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Sarah PiccirilloDepartment of Genetics, Developmental and Evolutionary Biology, School of Biological and Chemical Sciences, University of Missouri-Kansas City, 5100 Rockhill Rd., Kansas City, MO, 64110, USA.
Andrew P MorganDepartment of Genetics, Developmental and Evolutionary Biology, School of Biological and Chemical Sciences, University of Missouri-Kansas City, 5100 Rockhill Rd., Kansas City, MO, 64110, USA.
Andy Y LeonDepartment of Genetics, Developmental and Evolutionary Biology, School of Biological and Chemical Sciences, University of Missouri-Kansas City, 5100 Rockhill Rd., Kansas City, MO, 64110, USA.
Annika L SmithDepartment of Genetics, Developmental and Evolutionary Biology, School of Biological and Chemical Sciences, University of Missouri-Kansas City, 5100 Rockhill Rd., Kansas City, MO, 64110, USA.
Saul M HonigbergDepartment of Genetics, Developmental and Evolutionary Biology, School of Biological and Chemical Sciences, University of Missouri-Kansas City, 5100 Rockhill Rd., Kansas City, MO, 64110, USA. honigbergs@umkc.edu.ORCID http://orcid.org/0000-0003-4781-8160
University of Missouri–Kansas City · US

Funding

Leica TCS Sp8 MP Multiphoton MicroscopeS10OD021665 · OD · UNIVERSITY OF MISSOURI KANSAS CITY · PI DALLAS, SARAH L · 2016 to 2016
$600k
Mechanisms underlying the Rlm1-dependent G1 checkpointR15GM135807 · NIGMS · UNIVERSITY OF MISSOURI KANSAS CITY · PI HONIGBERG, SAUL M · 2020 to 2022
$493k
Zeiss LSM 710 Confocal Microscopy System for Imaging of Mineralized TissuesS10RR027668 · NCRR · UNIVERSITY OF MISSOURI KANSAS CITY · PI DALLAS, SARAH L · 2011 to 2011
$446k
NCRR NIH HHS S10 RR027668NIGMS NIH HHS R15 GM135807NIGMS NIH HHS R15GM135807NIH HHS S10 OD021665
6 · The paper itself

Abstract

Cell-cell signaling in microorganisms is still poorly characterized. In this Methods paper, we describe a genetic procedure for detecting cell-nonautonomous genetic effects, and in particular cell-cell signaling, termed the chimeric colony assay (CCA). The CCA measures the effect of a gene on a biological response in a neighboring cell. This assay can measure cell autonomy for range of biological activities including transcript or protein accumulation, subcellular localization, and cell differentiation. To date, the CCA has been used exclusively to investigate colony patterning in the budding yeast Saccharomyces cerevisiae. To demonstrate the wider potential of the assay, we applied this assay to two other systems: the effect of Grr1 on glucose repression of GAL1 transcription in yeast and the effect of rpsL on stop-codon translational readthrough in Escherichia coli. We also describe variations of the standard CCA that address specific aspects of cell-cell signaling, and we delineate essential controls for this assay. Finally, we discuss complementary approaches to the CCA. Taken together, this Methods paper demonstrates how genetic assays can reveal and explore the roles of cell-cell signaling in microbial processes.

Indexed as

Saccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCodon, TerminatorProtein BiosynthesisCodon, TerminatorSaccharomyces cerevisiae ProteinsCell–cell signalCell-nonautonomyColony patterningDensity dependenceEscherichia coliLocalizationSaccharomyces cerevisiae

Identifiers

PMID35119506
PMCPMC9101301
OpenAlexW4210331745

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.