Evidence map›Paper›PMID 35119255›Full record

ArticleACS chemical biology2022

High-Throughput Cellular Thermal Shift Assay Using Acoustic Transfer of Protein Lysates.

Ashley E Owens, Michael J Iannotti, Tino W Sanchez, Ty Voss, Abhijeet Kapoor, Matthew D Hall, Juan J Marugan, Sam Michael, Noel Southall, Mark J Henderson

Open access · hybridAbstract read
In one paragraph

Article in ACS chemical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Thermal Shift Assay in Ferroptosis.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Ashley E OwensNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland 20850, United States.
Michael J IannottiNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland 20850, United States.
Tino W SanchezNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland 20850, United States.
Ty VossNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland 20850, United States.
Abhijeet KapoorNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland 20850, United States.
Matthew D HallNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland 20850, United States.ORCID 0000-0002-5073-442X
Juan J MaruganNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland 20850, United States.ORCID 0000-0002-3951-7061
Sam MichaelNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland 20850, United States.
Noel SouthallNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland 20850, United States.
Mark J HendersonNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland 20850, United States.ORCID 0000-0001-8590-7338
National Institutes of Health · US

Funding

Development of high-throughput CETSA target engagement assaysZIATR000406 · NCATS · NATIONAL CENTER FOR ADVANCING TRANSLATIONAL SCIENCES · PI HENDERSON, MARK · 2020 to 2025
$1.1M
Functional Proteomics by Reverse Phase Protein Array in CancerR50CA221675 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI LU, YILING · 2017 to 2021
$726k
Intramural NIH HHS ZIA TR000406
6 · The paper itself

Abstract

Cellular thermal shift assay (CETSA) is a valuable method to confirm target engagement within a complex cellular environment, by detecting changes in a protein's thermal stability upon ligand binding. The classical CETSA method measures changes in the thermal stability of endogenous proteins using immunoblotting, which is low-throughput and laborious. Reverse-phase protein arrays (RPPAs) have been demonstrated as a detection modality for CETSA; however, the reported procedure requires manual processing steps that limit throughput and preclude screening applications. We developed a high-throughput CETSA using an acoustic RPPA (HT-CETSA-aRPPA) protocol that is compatible with 96- and 384-well microplates from start-to-finish, using low speed centrifugation to remove thermally destabilized proteins. The utility of HT-CETSA-aRPPA for guiding structure-activity relationship studies was demonstrated for inhibitors of lactate dehydrogenase A. Additionally, a collection of kinase inhibitors was screened to identify compounds that engage MEK1, a clinically relevant kinase target.

Indexed as

High-Throughput Screening AssaysProteinsAcousticsBiological AssayProtein Array AnalysisProteins

Identifiers

PMID35119255
PMCPMC10026039
OpenAlexW4210696037

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.