Evidence map›Paper›PMID 35118818›Full record

ArticleHLA2022

Minimal observed impact of HLA genotype on hospitalization and severity of SARS-CoV-2 infection.

Austin Nguyen, Tasneem Yusufali, Jill A Hollenbach, Abhinav Nellore, Reid F Thompson

Open access · greenAbstract read
In one paragraph

Article in HLA, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. A common allele of HLA mediates asymptomatic SARS-CoV-2 infection.medRxiv : the preprint server for health sciences · 2022
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Austin NguyenDepartment of Biomedical Engineering, Oregon Health & Science University, Portland, Oregon, USA.ORCID 0000-0001-7940-4830
Tasneem YusufaliDepartment of Neurology, University of California, San Francisco, San Francisco, California, USA.
Jill A HollenbachDepartment of Neurology, University of California, San Francisco, San Francisco, California, USA.
Abhinav NelloreDepartment of Biomedical Engineering, Oregon Health & Science University, Portland, Oregon, USA.
Reid F ThompsonDepartment of Biomedical Engineering, Oregon Health & Science University, Portland, Oregon, USA.ORCID 0000-0003-3661-5296
Oregon Health & Science University · USUniversity of California, San Francisco · US

Funding

MHC Variation in Host Response to SARS-CoV2 and COVID-19 OutcomesR01AI159260 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HOLLENBACH, JILL ALLISON · 2021 to 2025
$4.0M
Quantifying and improving radiotherapy outcomes among VeteransIK2CX002049 · VA · PORTLAND VA MEDICAL CENTER · PI THOMPSON, REID · 2020 to 2025
–
CSRD VA IK2 CX002049NIAID NIH HHS R01 AI159260
6 · The paper itself

Abstract

HLA is a critical component of the viral antigen presentation pathway. We investigated the relationship between the severity of SARS-CoV-2 disease and HLA type in 3235 individuals with confirmed SARS-CoV-2 infection. We found only the DPB1 locus to be associated with the binary outcome of whether an individual developed any COVID-19 symptoms. The number of peptides predicted to bind to an HLA allele had no significant relationship with disease severity both when stratifying individuals by ancestry or age and in a pooled analysis. Overall, at the population level, we found HLA type is significantly less predictive of COVID-19 disease severity than certain demographic factors and clinical comorbidities.

Indexed as

COVID-19AllelesGenotypeHospitalizationHumansSARS-CoV-2antigen presentationCOVID-19disease severityHLASARS-CoV-2

Identifiers

PMID35118818
PMCPMC10464832
OpenAlexW4210406736

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.