Evidence map›Paper›PMID 35116191›Full record

ArticleMolecular therapy. Nucleic acids2022

Programmable siRNA pro-drugs that activate RNAi activity in response to specific cellular RNA biomarkers.

Si-Ping Han, Lisa Scherer, Matt Gethers, Ane M Salvador, Marwa Ben Haj Salah, Rebecca Mancusi, Sahil Sagar, Robin Hu, Julia DeRogatis, Ya-Huei Kuo and 4 more

Open access · goldAbstract read
In one paragraph

Article in Molecular therapy. Nucleic acids, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Review
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  6. Article
  7. Unlocking the dark matter: noncoding RNAs and RNA modifications in cardiac aging.American journal of physiology. Heart and circulatory physiology · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Si-Ping HanMaterials and Process Simulation Center, California Institute of Technology, Pasadena, CA 91125, USA.
Lisa SchererDepartment of Molecular and Cellular Biology, City of Hope, Duarte, CA 91010, USA.
Matt GethersMaterials and Process Simulation Center, California Institute of Technology, Pasadena, CA 91125, USA.
Ane M SalvadorCardiovascular Research Center, Massachusetts General Hospital, Boston, MA 02114, USA.
Marwa Ben Haj SalahDepartment of Molecular and Cellular Biology, City of Hope, Duarte, CA 91010, USA.
Rebecca MancusiDepartment of Molecular and Cellular Biology, City of Hope, Duarte, CA 91010, USA.
Sahil SagarDepartment of Molecular and Cellular Biology, City of Hope, Duarte, CA 91010, USA.
Robin HuDepartment of Molecular and Cellular Biology, City of Hope, Duarte, CA 91010, USA.
Julia DeRogatisDepartment of Molecular and Cellular Biology, City of Hope, Duarte, CA 91010, USA.
Ya-Huei KuoDepartment of Hematological Malignancies Translational Science, Gehr Family Center for Leukemia Research, City of Hope, Duarte, CA 91010, USA.
Guido MarcucciDepartment of Hematological Malignancies Translational Science, Gehr Family Center for Leukemia Research, City of Hope, Duarte, CA 91010, USA.
Saumya DasCardiovascular Research Center, Massachusetts General Hospital, Boston, MA 02114, USA.
John J RossiDepartment of Molecular and Cellular Biology, City of Hope, Duarte, CA 91010, USA.
William A GoddardMaterials and Process Simulation Center, California Institute of Technology, Pasadena, CA 91125, USA.
City of Hope · USCalifornia Institute of Technology · USMassachusetts General Hospital · US

Funding

Transgenic Mouse FacilityP30CA033572 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI XIWEI WU · 1985 to 2026
$86.3M
COMBINATORIAL USE OF CCR5 RIBOZYMES WITH ANTI HIV1 RNASR01AI042552 · NIAID · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI ROSSI, JOHN JOSEPH · 1998 to 2019
$7.8M
Functional role and therapeutic targeting of exosomes and extracellular RNA biomarkers in heart failureR35HL150807 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI Saumya Das · 2020 to 2026
$6.7M
Develop novel inhaled neutralizing RNA therapeutics against COVID-19R21AI161075 · NIAID · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI ROSSI, JOHN JOSEPH · 2021 to 2021
$396k
NCI NIH HHS P30 CA033572NHLBI NIH HHS R35 HL150807NIAID NIH HHS R01 AI042552NIAID NIH HHS R21 AI161075
6 · The paper itself

Abstract

Since Paul Ehrlich's introduction of the "magic bullet" concept in 1908, drug developers have been seeking new ways to target drug activity to diseased cells while limiting effects on normal tissues. In recent years, it has been proposed that coupling riboswitches capable of detecting RNA biomarkers to small interfering RNAs (siRNAs) to create siRNA pro-drugs could selectively activate RNA interference (RNAi) activity in specific cells. However, this concept has not been achieved previously. We report here that we have accomplished this goal, validating a simple and programmable new design that functions reliably in mammalian cells. We show that these conditionally activated siRNAs (Cond-siRNAs) can switch RNAi activity against different targets between clearly distinguished OFF and ON states in response to different cellular RNA biomarkers. Notably, in a rat cardiomyocyte cell line (H9C2), one version of our construct demonstrated biologically meaningful inhibition of a heart-disease-related target gene protein phosphatase 3 catalytic subunit alpha (PPP3CA) in response to increased expression of the pathological marker atrial natriuretic peptide (NPPA) messenger RNA (mRNA). Our results demonstrate the ability of synthetic riboswitches to regulate gene expression in mammalian cells, opening a new path for development of programmable siRNA pro-drugs.

Indexed as

bionanotechnologycalcineurincardiac hypertrophyconditional siRNADNA nanotechnologynanobiotechnologyRNA biomarkerRNA nanotechnologyRNA therapy

Identifiers

PMID35116191
PMCPMC8789579
OpenAlexW4206424892

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.