Evidence map›Paper›PMID 35115689›Full record

ArticleNature genetics2022

Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.

Youwen Qin, Aki S Havulinna, Yang Liu, Pekka Jousilahti, Scott C Ritchie, Alex Tokolyi, Jon G Sanders, Liisa Valsta, Marta Brożyńska, Qiyun Zhu and 11 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Nature genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 385 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
385citing papers in PubMed, 3 pooled it
45.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

385 citing papers in PubMed, 3 syntheses or guidelines pooled it, 521 citations in OpenAlex.

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325 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors at 8 institutions in 4 countries.

Youwen QinCambridge Baker Systems Genomics Initiative, Baker Heart and Diabetes Institute, Melbourne, Victoria, Australia.ORCID http://orcid.org/0000-0003-3956-4711
Aki S HavulinnaDepartment of Public Health and Welfare, Finnish Institute for Health and Welfare, Helsinki, Finland.ORCID http://orcid.org/0000-0002-4787-8959
Yang LiuCambridge Baker Systems Genomics Initiative, Baker Heart and Diabetes Institute, Melbourne, Victoria, Australia.
Pekka JousilahtiDepartment of Public Health and Welfare, Finnish Institute for Health and Welfare, Helsinki, Finland.
Scott C RitchieCambridge Baker Systems Genomics Initiative, Baker Heart and Diabetes Institute, Melbourne, Victoria, Australia.ORCID http://orcid.org/0000-0002-8454-9548
Alex TokolyiWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.ORCID http://orcid.org/0000-0003-4222-7484
Jon G SandersDepartment of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY, USA.
Liisa ValstaDepartment of Public Health and Welfare, Finnish Institute for Health and Welfare, Helsinki, Finland.
Marta BrożyńskaCambridge Baker Systems Genomics Initiative, Baker Heart and Diabetes Institute, Melbourne, Victoria, Australia.
Qiyun ZhuDepartment of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA.
Anupriya TripathiDepartment of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA.
Yoshiki Vázquez-BaezaCenter for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0001-6014-2009
Rohit LoombaNAFLD Research Center, Department of Medicine, University of California San Diego, La Jolla, CA, USA.
Susan ChengSmidt Heart Institute, Cedars-Sinai Medical Center, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0002-4977-036X
Mohit JainDepartment of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA.
Teemu NiiranenDepartment of Public Health and Welfare, Finnish Institute for Health and Welfare, Helsinki, Finland.
Leo LahtiDepartment of Computing, University of Turku, Turku, Finland.ORCID http://orcid.org/0000-0001-5537-637X
Rob KnightDepartment of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA.
Veikko SalomaaDepartment of Public Health and Welfare, Finnish Institute for Health and Welfare, Helsinki, Finland.ORCID http://orcid.org/0000-0001-7563-5324
Michael Inouye *Cambridge Baker Systems Genomics Initiative, Baker Heart and Diabetes Institute, Melbourne, Victoria, Australia. mi336@medschl.cam.ac.uk.ORCID http://orcid.org/0000-0001-9413-6520
Guillaume Méric *Cambridge Baker Systems Genomics Initiative, Baker Heart and Diabetes Institute, Melbourne, Victoria, Australia. guillaume.meric@baker.edu.au.ORCID http://orcid.org/0000-0001-6288-9958
University of California San Diego · USBaker Heart and Diabetes Institute · AUFinnish Institute for Health and Welfare · FIUniversity of Turku · FICedars-Sinai Medical Center · USCornell University · USTuring Institute · GBWellcome Sanger Institute · GB

Funding

UC San Diego Clinical and Translational Research InstituteUL1TR001442 · NCATS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FIRESTEIN, GARY S, HOGARTH, MICHAEL · 2015 to 2024
$88.3M
Yeast Genetics and Stress Response Genes-BiomedicalP42ES010337 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TUKEY, ROBERT H · 2000 to 2022
$69.8M
Pediatric Trials in Non-Alcoholic Steatohepatitis (NASH)U01DK061734 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ROHIT LOOMBA · 2002 to 2026
$24.4M
San Diego Digestive Diseases Research CenterP30DK120515 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Bernd G. Schnabl · 2019 to 2026
$10.8M
HIV MASLD Clinical Research Network (HCRN)R01DK121378 · NIDDK · INDIANA UNIVERSITY INDIANAPOLIS · PI NAGA P CHALASANI, ROHIT LOOMBA · 2020 to 2026
$8.7M
QUS Technology for Diagnosis and Grading of Hepatic Steatosis in NAFLDR01DK106419 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LOOMBA, ROHIT, SIRLIN, CLAUDE B · 2015 to 2019
$3.4M
Non-invasive screening of diabetics for advanced fibrosis due to NAFLDR01DK124318 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LOOMBA, ROHIT · 2020 to 2022
$1.7M
British Heart Foundation RG/13/13/30194British Heart Foundation RG/18/13/33946Chief Scientist OfficeMedical Research Council MR/L003120/1NCATS NIH HHS UL1 TR001442NIDDK NIH HHS P30 DK120515NIDDK NIH HHS R01 DK106419NIDDK NIH HHS R01 DK121378NIDDK NIH HHS R01 DK124318NIDDK NIH HHS U01 DK061734NIEHS NIH HHS P42 ES010337Wellcome Trust
6 · The paper itself

Abstract

Human genetic variation affects the gut microbiota through a complex combination of environmental and host factors. Here we characterize genetic variations associated with microbial abundances in a single large-scale population-based cohort of 5,959 genotyped individuals with matched gut microbial metagenomes, and dietary and health records (prevalent and follow-up). We identified 567 independent SNP-taxon associations. Variants at the LCT locus associated with Bifidobacterium and other taxa, but they differed according to dairy intake. Furthermore, levels of Faecalicatena lactaris associated with ABO, and suggested preferential utilization of secreted blood antigens as energy source in the gut. Enterococcus faecalis levels associated with variants in the MED13L locus, which has been linked to colorectal cancer. Mendelian randomization analysis indicated a potential causal effect of Morganella on major depressive disorder, consistent with observational incident disease analysis. Overall, we identify and characterize the intricate nature of host-microbiota interactions and their association with disease.

Indexed as

DietGastrointestinal MicrobiomeGenetic VariationHost Microbial InteractionsPolymorphism, Single NucleotideABO Blood-Group SystemBifidobacteriumCohort StudiesColorectal NeoplasmsDietary FiberEnterococcus faecalisEubacterialesGastrointestinal TractGenome-Wide Association StudyHumansLactaseABO Blood-Group SystemDietary FiberLactaseMED13L protein, humanMediator Complex

Identifiers

PMID35115689
PMCPMC9883041
OpenAlexW4225854522

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.