ArticleScientific reports2022
Detecting major introgressions in wheat and their putative origins using coverage analysis.
Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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Who cites it
28 citing papers in PubMed.
- Characterization of oat chromosome rearrangements in advanced breeding lines and implications for genetic improvement.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Development and characterization of NB-ARC gene-derived SSRs in wheat (Triticum aestivum L.).Molecular biology reports · 2026Article
- Diverse reference genomes detect variants in the US winter wheat.The plant genome · 2026Article
- Plant domestication revisited: Genomic insights into origins, mechanisms, and convergent evolution.iScience · 2026Review
- GBS-based identification ofFrontiers in plant science · 2026Article
- Population-scale gene expression analysis reveals the contribution of expression diversity to the modern wheat improvement.Nature communications · 2025Article
- De novo annotation reveals transcriptomic complexity across the hexaploid wheat pan-genome.Nature communications · 2025Article
- Fine mapping of a powdery mildew resistance gene PmLF540 from wild emmer wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Evaluating Genome Assemblies for Optimized Completeness and Accuracy of Reference Gene Sequences in Wheat, Rye, and Triticale.Plants (Basel, Switzerland) · 2025Article
- The location and genome origin of alien chromatin in wheat founder parent Xiaoyan 6.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Impact of structural variations and genome partitioning on bread wheat hybrid performance.Functional & integrative genomics · 2025Article
- DArTseq genotyping facilitates identification of Aegilops biuncialis chromatin introgressed into bread wheat Mv9kr1.Plant molecular biology · 2024Article
- Analysis of a global wheat panel reveals a highly diverse introgression landscape and provides evidence for inter-homoeologue chromosomal recombination.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Origin and evolution of the bread wheat D genome.Nature · 2024Article
- Tagging large CNV blocks in wheat boosts digitalization of germplasm resources by ultra-low-coverage sequencing.Genome biology · 2024Article
- Chromosome-scale genome assembly of bread wheat's wild relative Triticum timopheevii.Scientific data · 2024Article
- A diverse panel of 755 bread wheat accessions harbors untapped genetic diversity in landraces and reveals novel genetic regions conferring powdery mildew resistance.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Introgressions lead to reference bias in wheat RNA-seq analysis.BMC biology · 2024Article
- GenoBaits®WheatplusEE: a targeted capture sequencing panel for quick and accurate identification of wheat-Thinopyrum derivatives.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- DArTseq genotyping facilitates the transfer of "exotic" chromatin from aFrontiers in plant science · 2024Article
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Introgressions from crop wild relatives (CWRs) have been used to introduce beneficial traits into cultivated plants. Introgressions have traditionally been detected using cytological methods. Recently, single nucleotide polymorphism (SNP)-based methods have been proposed to detect introgressions in crosses for which both parents are known. However, for unknown material, no method was available to detect introgressions and predict the putative donor species. Here, we present a method to detect introgressions and the putative donor species. We demonstrate the utility of this method using 10 publicly available wheat genome sequences and identify nine major introgressions. We show that the method can distinguish different introgressions at the same locus. We trace introgressions to early wheat cultivars and show that natural introgressions were utilised in early breeding history and still influence elite lines today. Finally, we provide evidence that these introgressions harbour resistance genes.
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