Evidence map›Paper›PMID 35114949›Full record

ArticleBMC genomics2022

Genome-wide identification of MAPK gene family members in Fagopyrum tataricum and their expression during development and stress responses.

Yingjun Yao, Haixia Zhao, Lei Sun, Wenjing Wu, Chenglei Li, Qi Wu

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
12.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 60 citations in OpenAlex.

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  13. Genome-wide identification ofFrontiers in genetics · 2024
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  17. Current issues in molecular biology · 2023
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  20. Physiological and molecular mechanism of ginger (Frontiers in plant science · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Yingjun Yao *College of Life Science, Sichuan Agricultural University, No.46, Xinkang Road, Ya'an, 625014, Sichuan, China.
Haixia Zhao *College of Life Science, Sichuan Agricultural University, No.46, Xinkang Road, Ya'an, 625014, Sichuan, China.
Lei SunCollege of Life Science, Sichuan Agricultural University, No.46, Xinkang Road, Ya'an, 625014, Sichuan, China.
Wenjing WuCollege of Life Science, Sichuan Agricultural University, No.46, Xinkang Road, Ya'an, 625014, Sichuan, China.
Chenglei LiCollege of Life Science, Sichuan Agricultural University, No.46, Xinkang Road, Ya'an, 625014, Sichuan, China.
Qi WuCollege of Life Science, Sichuan Agricultural University, No.46, Xinkang Road, Ya'an, 625014, Sichuan, China. wuqi@sicau.edu.cn.
Sichuan Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMitogen-activated protein kinases (MAPKs) plays essential roles in the development, hormone regulation and abiotic stress response of plants. Nevertheless, a comprehensive study on MAPK family members has thus far not been performed in Tartary buckwheat.

resultsHere, we identified 16 FtMAPKs in the Fagopyrum tataricum genome. Phylogenetic analysis showed that the FtMAPK family members could be classified into Groups A, B, C and D, in which A, B and C members contain a Thr-Glu-Tyr (TEY) signature motif and Group D members contain a Thr-Asp-Tyr (TDY) signature motif. Promoter cis-acting elements showed that most Pro

conclusionsA total of 16 MAPKs were identified in Tartary buckwheat, and the members of the MAPK family containing the TDY motif were found to have expanded. The same subfamily members have relatively conserved gene structures and similar protein motifs. Tissue-specific expression indicated that the expression of all FtMAPK genes varied widely in the roots, stems, leaves and flowers. Most FtMAPKs can regulate the expression of other transcription factors and participate in the abiotic stress response. Our findings comprehensively revealed the FtMAPK gene family and laid a theoretical foundation for the functional characterization of FtMAPKs.

Indexed as

FagopyrumGene Expression Regulation, PlantPhylogenyPlant ProteinsPlant ProteinsAbiotic stressEvolutionExpression patternsFunctional verificationMAPKTartary buckwheat

Identifiers

PMID35114949
PMCPMC8815160
OpenAlexW4210269159

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.