Evidence map›Paper›PMID 35111176›Full record

ArticleFrontiers in plant science2021

Using Convolutional Neural Networks to Efficiently Extract Immense Phenological Data From Community Science Images.

Rachel A Reeb, Naeem Aziz, Samuel M Lapp, Justin Kitzes, J Mason Heberling, Sara E Kuebbing

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
5.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 24 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Rachel A ReebDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, United States.
Naeem AzizDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, United States.
Samuel M LappDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, United States.
Justin KitzesDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, United States.
J Mason HeberlingDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, United States.
Sara E KuebbingDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, United States.
University of Pittsburgh · USCarnegie Museum of Natural History · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Community science image libraries offer a massive, but largely untapped, source of observational data for phenological research. The iNaturalist platform offers a particularly rich archive, containing more than 49 million verifiable, georeferenced, open access images, encompassing seven continents and over 278,000 species. A critical limitation preventing scientists from taking full advantage of this rich data source is labor. Each image must be manually inspected and categorized by phenophase, which is both time-intensive and costly. Consequently, researchers may only be able to use a subset of the total number of images available in the database. While iNaturalist has the potential to yield enough data for high-resolution and spatially extensive studies, it requires more efficient tools for phenological data extraction. A promising solution is automation of the image annotation process using deep learning. Recent innovations in deep learning have made these open-source tools accessible to a general research audience. However, it is unknown whether deep learning tools can accurately and efficiently annotate phenophases in community science images. Here, we train a convolutional neural network (CNN) to annotate images of

Indexed as

Alliaria petiolata (garlic mustard)citizen scienceconvolutional neural networkdeep learningiNaturalistphenology

Identifiers

PMID35111176
PMCPMC8801702
OpenAlexW4206373571

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.