Evidence map›Paper›PMID 35108092›Full record

ArticleApplied and environmental microbiology2022

Differential Regulation and Production of Secondary Metabolites among Isolates of the Fungal Wheat Pathogen Zymoseptoria tritici.

M Amine Hassani, Ernest Oppong-Danquah, Alice Feurtey, Deniz Tasdemir, Eva H Stukenbrock

Open access · hybridAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Pan-genome survey ofFrontiers in microbiology · 2024
    Article
  3. Frontiers in microbiology · 2024
    Article
  4. The Wheat EndophyteJournal of fungi (Basel, Switzerland) · 2023
    Article
  5. Article
  6. Review
  7. Fungal Effectoromics: A World in Constant Evolution.International journal of molecular sciences · 2022
    Review
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

M Amine Hassani *Environmental Genomics, Christian-Albrechts University of Kiel, Kiel and Max Planck Institute for Evolutionary Biology, Plön, Germany.
Ernest Oppong-Danquah *GEOMAR Centre for Marine Biotechnology (GEOMAR-Biotech), Research Unit Marine Natural Products Chemistry, GEOMAR Helmholtz Centre for Ocean Research Kielgrid.15649.3f, Kiel, Germany.
Alice FeurteyEnvironmental Genomics, Christian-Albrechts University of Kiel, Kiel and Max Planck Institute for Evolutionary Biology, Plön, Germany.
Deniz TasdemirGEOMAR Centre for Marine Biotechnology (GEOMAR-Biotech), Research Unit Marine Natural Products Chemistry, GEOMAR Helmholtz Centre for Ocean Research Kielgrid.15649.3f, Kiel, Germany.ORCID 0000-0002-7841-6271
Eva H StukenbrockEnvironmental Genomics, Christian-Albrechts University of Kiel, Kiel and Max Planck Institute for Evolutionary Biology, Plön, Germany.ORCID 0000-0001-8590-3345
Max Planck Institute for Evolutionary Biology · DEChristian-Albrechts-Universität zu Kiel · DEGEOMAR Helmholtz Centre for Ocean Research Kiel · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genome of the wheat-pathogenic fungus Zymoseptoria tritici represents extensive presence-absence variation in gene content. Here, we addressed variation in biosynthetic gene cluster (BGC) content and biochemical profiles among three isolates. We analyzed secondary metabolite properties based on genome, transcriptome, and metabolome data. The isolates represent highly distinct genome architecture but harbor similar repertoires of BGCs. Expression profiles for most BGCs show comparable patterns of regulation among the isolates, suggesting a conserved biochemical infection program. For all three isolates, we observed a strong upregulation of a putative abscisic acid (ABA) gene cluster during biotrophic host colonization, indicating that

Indexed as

AscomycotaPlant DiseasesTranscriptomeVirulencechemodiversityfeature-based molecular networkgene clustersgene regulationgenome evolutionhistone modificationsmetabolomicspathogenicity

Identifiers

PMID35108092
PMCPMC8939313
OpenAlexW4225528734

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.