Evidence map›Paper›PMID 35108053›Full record

ArticleScience advances2022

Deeply conserved synteny and the evolution of metazoan chromosomes.

Oleg Simakov, Jessen Bredeson, Kodiak Berkoff, Ferdinand Marletaz, Therese Mitros, Darrin T Schultz, Brendan L O'Connell, Paul Dear, Daniel E Martinez, Robert E Steele and 3 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 120 papers.

0numbers the graph read from it
0cells of the map it votes in
120citing papers in PubMed
17.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

120 citing papers in PubMed, 204 citations in OpenAlex.

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60 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 9 institutions in 5 countries.

Oleg SimakovDepartment for Neurosciences and Developmental Biology, University of Vienna, Vienna 1010, Austria.ORCID 0000-0002-3585-4511
Jessen BredesonDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA.ORCID 0000-0001-5489-8512
Kodiak BerkoffDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA.ORCID 0000-0002-7869-9814
Ferdinand MarletazMolecular Genetics Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1, Tancha, Onna, Okinawa 904-0495, Japan.ORCID 0000-0001-8124-4266
Therese MitrosDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA.ORCID 0000-0001-6708-3988
Darrin T SchultzDepartment of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA 95064, USA.ORCID 0000-0003-1190-1122
Brendan L O'ConnellDepartment of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA 95064, USA.ORCID 0000-0001-7757-4561
Paul DearMote Research Ltd, Babraham Hall, Babraham, Cambridge CB2 4AT, UK.
Daniel E MartinezDepartment of Biology, Pomona College, Claremont, CA 91711, USA.ORCID 0000-0002-5157-6101
Robert E SteeleDepartment of Biological Chemistry, University of California, Irvine, Irvine, CA 92697-1700, USA.
Richard E GreenDepartment of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA 95064, USA.ORCID 0000-0003-0516-5827
Charles N DavidFaculty of Biology, Ludwig Maximilian University of Munich, Munich 80539, Germany.ORCID 0000-0002-9811-4043
Daniel S RokhsarDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA.ORCID 0000-0002-8704-2224
University of California, Berkeley · USOkinawa Institute of Science and Technology Graduate University · JPUniversity of California, Santa Cruz · USBabraham Institute · GBLudwig-Maximilians-Universität München · DEMonterey Bay Aquarium Research Institute · USPomona College · USUniversity of California, Irvine · USUniversity of Vienna · AT

Funding

Univ.of Calif., Irvine Cancer Center Support GrantP30CA062203 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Melanie Funes · 1994 to 2026
$57.9M
Systematic improvement of Xenopus gene annotations and reference genomesR01HD080708 · NICHD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROKHSAR, DANIEL SOLEYMAN · 2014 to 2017
$2.2M
PacBio RS Single Molecule, Real-Time (SMRT) DNA SequencerS10OD010794 · OD · UNIVERSITY OF CALIFORNIA-IRVINE · PI SANDMEYER, SUZANNE · 2012 to 2012
$600k
High-Throughput DNA SequencerS10OD021718 · OD · UNIVERSITY OF CALIFORNIA-IRVINE · PI SANDMEYER, SUZANNE · 2016 to 2016
$600k
High Throughput DNA SequencerS10RR025496 · NCRR · UNIVERSITY OF CALIFORNIA-IRVINE · PI SANDMEYER, SUZANNE · 2009 to 2009
$500k
Austrian Science Fund FWF P 32190NCI NIH HHS P30 CA062203NCRR NIH HHS S10 RR025496NICHD NIH HHS R01 HD080708NIH HHS S10 OD010794NIH HHS S10 OD021718
6 · The paper itself

Abstract

Animal genomes show networks of deeply conserved gene linkages whose phylogenetic scope and chromosomal context remain unclear. Here, we report chromosome-scale conservation of synteny among bilaterians, cnidarians, and sponges and use comparative analysis to reconstruct ancestral chromosomes across major animal groups. Comparisons among diverse metazoans reveal the processes of chromosome evolution that produced contemporary karyotypes from their Precambrian progenitors. On the basis of these findings, we introduce a simple algebraic representation of chromosomal change and use it to establish a unified systematic framework for metazoan chromosome evolution. We find that fusion-with-mixing, a previously unappreciated mode of chromosome change, has played a central role. We find that relicts of several metazoan chromosomal units are preserved in unicellular eukaryotes. These conserved pre-metazoan linkages include the chromosomal unit that encodes the most diverse set of metazoan homeobox genes, suggesting a candidate genomic context for the early diversification of this key gene family.

Identifiers

PMID35108053
PMCPMC8809688
OpenAlexW4210701812

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.