Evidence map›Paper›PMID 35107838›Full record

ArticleThe New phytologist2022

The stem rust effector protein AvrSr50 escapes Sr50 recognition by a substitution in a single surface-exposed residue.

Diana Ortiz, Jian Chen, Megan A Outram, Isabel M L Saur, Narayana M Upadhyaya, Rohit Mago, Daniel J Ericsson, Stella Cesari, Chunhong Chen, Simon J Williams and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The New phytologist, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
13.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 69 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Precision Editing of NLRS Improves Effector Recognition for Enhanced Disease Resistance.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  5. Review
  6. Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. The Role ofInternational journal of molecular sciences · 2025
    Article
  12. Article
  13. Article
  14. Article
  15. Bioengineering a plant NLR immune receptor with a robust binding interface toward a conserved fungal pathogen effector.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Diana Ortiz *Agriculture and Food, Commonwealth Scientific and Industrial Research Organisation, Canberra, ACT, 2601, Australia.ORCID 0000-0001-6120-5788
Jian Chen *Agriculture and Food, Commonwealth Scientific and Industrial Research Organisation, Canberra, ACT, 2601, Australia.ORCID 0000-0001-8670-6984
Megan A Outram *Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia.ORCID 0000-0003-4510-3575
Isabel M L SaurDepartment of Plant-Microbe Interactions, Max Planck Institute for Plant Breeding Research, Cologne, 50829, Germany.ORCID 0000-0002-5610-1260
Narayana M UpadhyayaAgriculture and Food, Commonwealth Scientific and Industrial Research Organisation, Canberra, ACT, 2601, Australia.ORCID 0000-0002-3052-0416
Rohit MagoAgriculture and Food, Commonwealth Scientific and Industrial Research Organisation, Canberra, ACT, 2601, Australia.ORCID 0000-0001-5286-073X
Daniel J EricssonResearch School of Biology, The Australian National University, Canberra, ACT, 2601, Australia.ORCID 0000-0001-5101-9244
Stella CesariPHIM Plant Health Institute, Université de Montpellier, INRAE, CIRAD, Institut Agro, IRD, Montpellier, 34980, France.ORCID 0000-0001-8558-0371
Chunhong ChenAgriculture and Food, Commonwealth Scientific and Industrial Research Organisation, Canberra, ACT, 2601, Australia.ORCID 0000-0001-7813-2415
Simon J WilliamsResearch School of Biology, The Australian National University, Canberra, ACT, 2601, Australia.ORCID 0000-0003-4781-6261
Peter N DoddsAgriculture and Food, Commonwealth Scientific and Industrial Research Organisation, Canberra, ACT, 2601, Australia.ORCID 0000-0003-0620-5923
Commonwealth Scientific and Industrial Research Organisation · AUAustralian National University · AUCentre de Coopération Internationale en Recherche Agronomique pour le Développement · FRUniversity of Cologne · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pathogen effectors are crucial players during plant colonisation and infection. Plant resistance mostly relies on effector recognition to activate defence responses. Understanding how effector proteins escape from plant surveillance is important for plant breeding and resistance deployment. Here we examined the role of genetic diversity of the stem rust (Puccinia graminis f. sp. tritici (Pgt)) AvrSr50 gene in determining recognition by the corresponding wheat Sr50 resistance gene. We solved the crystal structure of a natural variant of AvrSr50 and used site-directed mutagenesis and transient expression assays to dissect the molecular mechanisms explaining gain of virulence. We report that AvrSr50 can escape recognition by Sr50 through different mechanisms including DNA insertion, stop codon loss or by amino-acid variation involving a single substitution of the AvrSr50 surface-exposed residue Q121. We also report structural homology of AvrSr50 to cupin superfamily members and carbohydrate-binding modules indicating a potential role in binding sugar moieties. This study identifies key polymorphic sites present in AvrSr50 alleles from natural stem rust populations that play important roles to escape from Sr50 recognition. This constitutes an important step to better understand Pgt effector evolution and to monitor AvrSr50 variants in natural rust populations.

Indexed as

BasidiomycotaDisease ResistancePlant BreedingPlant DiseasesTriticumAvrSr50effector evolutioneffector structureresistance breakdownSr50stem rustwheat resistance

Identifiers

PMID35107838
PMCPMC9306850
OpenAlexW4210373340

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.