Evidence map›Paper›PMID 35107805›Full record

ArticleBrazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]2022

Tuberculosis/COVID-19 co-infection detected in a single sputum sample using a rapid molecular test.

Akemi Oshiro Guirelli, Thayná Rosa Bispo, Daniela Rodrigues Colpas, Ivana Barros de Campos, Erica Chimara, Maria Cecília Cergole-Novella, Itatiana Ferreira Rodart, Valéria Dos Santos Candido, Paula Jimena Segura-Ramírez, Vilma Dos Santos Menezes Gaiotto Daros and 1 more

Open access · bronzeAbstract readCase Reports
In one paragraph

Article in Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology], 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.1field-weighted citation impact, top 57% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Akemi Oshiro GuirelliSanto André Regional Center, Adolfo Lutz Institute, Av Ramiro Colleoni, 240 - Vila Dora, Santo André, SP, Zip Code 09040-160, Brazil.ORCID http://orcid.org/0000-0003-4518-6518
Thayná Rosa BispoSanto André Regional Center, Adolfo Lutz Institute, Av Ramiro Colleoni, 240 - Vila Dora, Santo André, SP, Zip Code 09040-160, Brazil.ORCID http://orcid.org/0000-0003-4707-1618
Daniela Rodrigues ColpasSanto André Regional Center, Adolfo Lutz Institute, Av Ramiro Colleoni, 240 - Vila Dora, Santo André, SP, Zip Code 09040-160, Brazil.ORCID http://orcid.org/0000-0002-5901-2095
Ivana Barros de CamposSanto André Regional Center, Adolfo Lutz Institute, Av Ramiro Colleoni, 240 - Vila Dora, Santo André, SP, Zip Code 09040-160, Brazil.ORCID http://orcid.org/0000-0003-0334-0572
Erica ChimaraAdolfo Lutz Institute, Av Dr Arnaldo, 355 - Pacaembu, São Paulo, SP, Zip Code 01246-902, Brazil.ORCID http://orcid.org/0000-0001-9574-8449
Maria Cecília Cergole-NovellaSanto André Regional Center, Adolfo Lutz Institute, Av Ramiro Colleoni, 240 - Vila Dora, Santo André, SP, Zip Code 09040-160, Brazil.ORCID http://orcid.org/0000-0001-9671-825X
Itatiana Ferreira RodartSanto André Regional Center, Adolfo Lutz Institute, Av Ramiro Colleoni, 240 - Vila Dora, Santo André, SP, Zip Code 09040-160, Brazil.ORCID http://orcid.org/0000-0001-8370-9303
Valéria Dos Santos CandidoSanto André Regional Center, Adolfo Lutz Institute, Av Ramiro Colleoni, 240 - Vila Dora, Santo André, SP, Zip Code 09040-160, Brazil.ORCID http://orcid.org/0000-0002-1922-4771
Paula Jimena Segura-RamírezSanto André Regional Center, Adolfo Lutz Institute, Av Ramiro Colleoni, 240 - Vila Dora, Santo André, SP, Zip Code 09040-160, Brazil.ORCID http://orcid.org/0000-0003-0059-2600
Vilma Dos Santos Menezes Gaiotto DarosSanto André Regional Center, Adolfo Lutz Institute, Av Ramiro Colleoni, 240 - Vila Dora, Santo André, SP, Zip Code 09040-160, Brazil.ORCID http://orcid.org/0000-0001-8359-0111
Andreia Moreira Dos Santos CarmoSanto André Regional Center, Adolfo Lutz Institute, Av Ramiro Colleoni, 240 - Vila Dora, Santo André, SP, Zip Code 09040-160, Brazil. amscarmo@yahoo.com.br.ORCID http://orcid.org/0000-0002-0602-4623
Instituto Adolfo Lutz · BR

Funding

Fundação de Amparo à Pesquisa do Estado de São Paulo 2020/12124-0
6 · The paper itself

Abstract

Tuberculosis (TB) and COVID-19 affect the lungs and are transmitted mainly by aerosols or particles of saliva from infected persons. Clinical similarities between diseases can affect correct diagnosis. Individuals belonging to the population deprived of liberty (PDL) are at increased risk of contagion due to precarious sanitary conditions and overcrowded environments. A variety of specimens may be suitable for the diagnosis of COVID-19, using molecular diagnostic techniques; however, there is little data on the analysis of sputum samples with the Xpert Xpress SARS-CoV-2® for the diagnosis of COVID-19, especially in this population group. The present study reports a case of TB and COVID-19 co-infection detected in sputum from an individual belonging to the PDL. For the detection, it used the GeneXpert platform (Cepheid, USA). Mycobacterium tuberculosis complex (MTC) was detected using the Xpert MTB/RIF Ultra® cartridge and SARS-CoV-2 was detected using the Xpert Xpress SARS-CoV-2® cartridge. The genes IS6110 and IS1081 were detected within 80 min indicating the presence of MTC, with no mutations related to resistance to rifampicin. The SARS-CoV-2 E and N2 genes were detected within 45 min. The result was confirmed by RT-qPCR with detection of E, N, and RdRP/S genes in the sputum and nasopharyngeal (NP) specimens. Rapid diagnoses that allow the identification and differentiation of such diseases are important for adequate epidemiological surveillance, isolation of infected individuals, and interruption of the transmission chain. Using the GeneXpert platform, specimens can be tested as soon as they are received, without the need for prior preparation. The US Food and Drug Administration has issued emergency authorization for the use of the Cepheid Xpert Xpress SARS-CoV-2 for the rapid detection of SARS-CoV-2 using specimens from a NP or nasal wash/aspirate. The case presented here gains an innovation with the use of the sputum to COVID-19 diagnosis.

Indexed as

CoinfectionCOVID-19Mycobacterium tuberculosisTuberculosisCOVID-19 TestingHumansMolecular Diagnostic TechniquesRifampinSARS-CoV-2Sensitivity and SpecificitySputumRifampinCo-infectionCOVID-19SARS-CoV-2Tuberculosis, population deprived of liberty, vulnerable population

Identifiers

PMID35107805
PMCPMC8809221
OpenAlexW4210467131

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.