Evidence map›Paper›PMID 35107341›Full record

ArticlemSphere2022

OptiFit: an Improved Method for Fitting Amplicon Sequences to Existing OTUs.

Kelly L Sovacool, Sarah L Westcott, M Brodie Mumphrey, Gabrielle A Dotson, Patrick D Schloss

Open access · goldAbstract read
In one paragraph

Article in mSphere, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Kelly L SovacoolDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan, USA.ORCID 0000-0003-3283-829X
Sarah L WestcottDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, USA.
M Brodie MumphreyDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan, USA.ORCID 0000-0003-3150-8694
Gabrielle A DotsonDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan, USA.ORCID 0000-0001-6624-5332
Patrick D SchlossDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, USA.ORCID 0000-0002-6935-4275
University of Michigan · US

Funding

University of Michigan Training Program in Genomic ScienceT32HG000040 · NHGRI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Sebastian Zoellner · 1995 to 2026
$16.4M
Systems biology of Clostridium difficile infectionU01AI124255 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SCHLOSS, PATRICK DAVID, YOUNG, VINCENT B · 2016 to 2020
$9.8M
Proteogenomics of Cancer Training ProgramT32CA140044 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RAO, ARVIND, SARTOR, MAUREEN AGNES · 2010 to 2024
$3.9M
Training Program in BioinformaticsT32GM070449 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ATHEY, BRIAN DAVID, BURMEISTER, MARGIT · 2005 to 2020
$3.6M
Identification of Microbiome Based Markers to Improve Colorectal Cancer DetectionR01CA215574 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RUFFIN, MACK T., SCHLOSS, PATRICK DAVID · 2018 to 2021
$1.4M
NCI NIH HHS R01 CA215574NCI NIH HHS T32 CA140044NHGRI NIH HHS T32 HG000040NIAID NIH HHS U01 AI124255NIGMS NIH HHS T32 GM070449
6 · The paper itself

Abstract

Assigning amplicon sequences to operational taxonomic units (OTUs) is an important step in characterizing microbial communities across large data sets. A notable difference between

Indexed as

MetagenomicsCluster AnalysisPhylogenyRNA, Ribosomal, 16SSequence Analysis, DNARNA, Ribosomal, 16S16S rRNA genebioinformaticsclusteringmetagenomicsmicrobial ecologymicrobiome

Identifiers

PMID35107341
PMCPMC8809378
OpenAlexW4225733754

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.